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(partial) EasyBuild log for failed build of /tmp/eb-tpcutspv/files_pr20760/g/GLI/GLI-4.5.31-GCCcore-13.2.0.eb (PR(s) #20760)
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| == 2024-07-04 07:40:12,315 easyblock.py:313 INFO This is EasyBuild 4.9.3.dev0-r52e3c0d242a53dedd12ecc95451026cc6cf0dba3 (framework: 4.9.3.dev0-r33a5030339ff3fa37ab308fe562e051387080243, easyblocks: 4.9.3.dev0-r52e3c0d242a53dedd12ecc95451026cc6cf0dba3) on host gracehopper. | |
| == 2024-07-04 07:40:12,315 easyblock.py:319 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/home/easybuild/ebinstall/develop/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py) | |
| == 2024-07-04 07:40:12,315 easyblock.py:1058 INFO Build dir set to /dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0 | |
| == 2024-07-04 07:40:12,315 easyblock.py:1115 INFO Software install dir set to /apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0 | |
| == 2024-07-04 07:40:12,315 easyblock.py:1120 INFO Module install dir set to /apps/easybuild/modules/all | |
| == 2024-07-04 07:40:12,315 easyblock.py:288 INFO Init completed for application name GLI version 4.5.31 | |
| == 2024-07-04 07:40:12,316 easyblock.py:4230 INFO Obtained application instance of for GLI (easyblock: ConfigureMake) | |
| == 2024-07-04 07:40:12,316 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,316 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,316 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2024-07-04 07:40:12,316 one.py:180 INFO Skipping reformatting value for parameter 'toolchainopts' | |
| == 2024-07-04 07:40:12,317 filetools.py:1912 INFO Creating directory /tmp/eb-tpcutspv/reprod_20240704074012_44208 (parents: True, set_gid: False, sticky: False) | |
| == 2024-07-04 07:40:12,317 easyblock.py:4484 INFO Dumped easyconfig instance to /tmp/eb-tpcutspv/reprod_20240704074012_44208/GLI-4.5.31-GCCcore-13.2.0.eb | |
| == 2024-07-04 07:40:12,317 filetools.py:1912 INFO Creating directory /tmp/eb-tpcutspv/reprod_20240704074012_44208/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2024-07-04 07:40:12,317 filetools.py:2425 INFO /home/easybuild/ebinstall/develop/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-tpcutspv/reprod_20240704074012_44208/easyblocks/configuremake.py | |
| == 2024-07-04 07:40:12,317 easyblock.py:4464 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-tpcutspv/reprod_20240704074012_44208/easyblocks | |
| == 2024-07-04 07:40:12,317 easyblock.py:2238 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2024-07-04 07:40:12,317 build_log.py:267 INFO building and installing GLI/4.5.31-GCCcore-13.2.0... | |
| == 2024-07-04 07:40:12,318 filetools.py:2005 INFO Lock /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock does not exist | |
| == 2024-07-04 07:40:12,318 filetools.py:1946 INFO Creating lock at /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock... | |
| == 2024-07-04 07:40:12,318 filetools.py:1912 INFO Creating directory /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock (parents: True, set_gid: False, sticky: False) | |
| == 2024-07-04 07:40:12,318 filetools.py:1955 INFO Lock created: /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock | |
| == 2024-07-04 07:40:12,318 build_log.py:267 INFO fetching files... | |
| == 2024-07-04 07:40:12,318 easyblock.py:3952 INFO Starting fetch step | |
| == 2024-07-04 07:40:12,318 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,318 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,318 easyblock.py:3960 INFO Running method fetch_step part of step fetch | |
| == 2024-07-04 07:40:12,318 easyblock.py:2360 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2024-07-04 07:40:12,318 easyblock.py:811 INFO Considering directory in which easyconfig file is located when searching for gli-4.5.31.tar.gz: /tmp/eb-tpcutspv/files_pr20760/g/GLI | |
| == 2024-07-04 07:40:12,318 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/easybuild/ebinstall/develop/easybuild-framework/eb | |
| == 2024-07-04 07:40:12,318 tools.py:290 INFO Not considering /home/easybuild/ebinstall/develop (no easybuild/easyconfigs subdir found) | |
| == 2024-07-04 07:40:12,319 easyblock.py:853 INFO Found file gli-4.5.31.tar.gz at /apps/easybuild/sources/g/GLI/gli-4.5.31.tar.gz | |
| == 2024-07-04 07:40:12,319 easyblock.py:496 INFO Added sources: [{'name': 'gli-4.5.31.tar.gz', 'path': '/apps/easybuild/sources/g/GLI/gli-4.5.31.tar.gz', 'cmd': None, 'checksum': '13b7def217672ab4fa01e39977af26f3fbbe0f7bbe7e7c42c2c4aa0ea5fc8c05', 'finalpath': '/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0'}] | |
| == 2024-07-04 07:40:12,319 easyblock.py:2403 INFO no patches provided | |
| == 2024-07-04 07:40:12,327 easyblock.py:2413 INFO md5 checksum for /apps/easybuild/sources/g/GLI/gli-4.5.31.tar.gz: eb918495693cf569c4a37553b490c67e | |
| == 2024-07-04 07:40:12,330 easyblock.py:2413 INFO sha256 checksum for /apps/easybuild/sources/g/GLI/gli-4.5.31.tar.gz: 13b7def217672ab4fa01e39977af26f3fbbe0f7bbe7e7c42c2c4aa0ea5fc8c05 | |
| == 2024-07-04 07:40:12,330 easyblock.py:2448 INFO Checking dirs that need to be created: ['/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', '/apps/easybuild/modules/all/GLI', '/apps/easybuild/modules/vis/GLI'] | |
| == 2024-07-04 07:40:12,330 configuremake.py:95 INFO config.guess version: 2018-08-29 (last updated: 2024-07-03T11:28:28.514895, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2024-07-04 07:40:12,330 configuremake.py:151 INFO Found config.guess at /apps/easybuild/sources/generic/eb_v4.9.3.dev0/ConfigureMake/config.guess | |
| == 2024-07-04 07:40:12,331 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2024-07-04 07:40:12,331 easyblock.py:3952 INFO Starting ready step | |
| == 2024-07-04 07:40:12,331 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,331 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,331 easyblock.py:3960 INFO Running method check_readiness_step part of step ready | |
| == 2024-07-04 07:40:12,331 easyblock.py:2257 INFO Setting parallelism: 1 | |
| == 2024-07-04 07:40:12,342 easyblock.py:2309 WARNING Loaded modules detected: ['EasyBuild-develop'] | |
| == 2024-07-04 07:40:12,342 easyblock.py:3960 INFO Running method make_builddir part of step ready | |
| == 2024-07-04 07:40:12,342 easyblock.py:1140 INFO Found old directory /dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0 | |
| == 2024-07-04 07:40:12,346 filetools.py:383 INFO Path /dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0 successfully removed. | |
| == 2024-07-04 07:40:12,346 easyblock.py:1148 INFO Removed old directory /dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0 | |
| == 2024-07-04 07:40:12,346 filetools.py:1912 INFO Creating directory /dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0 (parents: True, set_gid: False, sticky: False) | |
| == 2024-07-04 07:40:12,346 easyblock.py:3960 INFO Running method reset_env part of step ready | |
| == 2024-07-04 07:40:12,346 easyblock.py:3960 INFO Running method handle_iterate_opts part of step ready | |
| == 2024-07-04 07:40:12,346 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,347 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,347 build_log.py:267 INFO unpacking... | |
| == 2024-07-04 07:40:12,347 easyblock.py:3952 INFO Starting source step | |
| == 2024-07-04 07:40:12,347 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,347 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,347 easyblock.py:3960 INFO Running method checksum_step part of step source | |
| == 2024-07-04 07:40:12,349 easyblock.py:2466 INFO Checksum verification for /apps/easybuild/sources/g/GLI/gli-4.5.31.tar.gz using 13b7def217672ab4fa01e39977af26f3fbbe0f7bbe7e7c42c2c4aa0ea5fc8c05 passed. | |
| == 2024-07-04 07:40:12,349 easyblock.py:3960 INFO Running method extract_step part of step source | |
| == 2024-07-04 07:40:12,349 easyblock.py:2578 INFO Unpacking source gli-4.5.31.tar.gz | |
| == 2024-07-04 07:40:12,350 run.py:247 INFO running cmd: tar xzf /apps/easybuild/sources/g/GLI/gli-4.5.31.tar.gz | |
| == 2024-07-04 07:40:12,420 build_log.py:267 INFO patching... | |
| == 2024-07-04 07:40:12,420 easyblock.py:3952 INFO Starting patch step | |
| == 2024-07-04 07:40:12,420 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,420 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,420 easyblock.py:3960 INFO Running method patch_step part of step patch | |
| == 2024-07-04 07:40:12,420 build_log.py:267 INFO preparing... | |
| == 2024-07-04 07:40:12,420 easyblock.py:3952 INFO Starting prepare step | |
| == 2024-07-04 07:40:12,420 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,421 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='None', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,421 easyblock.py:3960 INFO Running method prepare_step part of step prepare | |
| == 2024-07-04 07:40:12,421 modules.py:628 INFO Checking whether binutils/2.40-GCCcore-13.2.0 exists... | |
| == 2024-07-04 07:40:12,421 modules.py:633 INFO Module binutils/2.40-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-07-04 07:40:12,421 modules.py:656 INFO Result for existence check of binutils/2.40-GCCcore-13.2.0 module: True | |
| == 2024-07-04 07:40:12,421 modules.py:628 INFO Checking whether X11/20231019-GCCcore-13.2.0 exists... | |
| == 2024-07-04 07:40:12,421 modules.py:633 INFO Module X11/20231019-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-07-04 07:40:12,421 modules.py:656 INFO Result for existence check of X11/20231019-GCCcore-13.2.0 module: True | |
| == 2024-07-04 07:40:12,421 modules.py:628 INFO Checking whether zlib/1.2.13-GCCcore-13.2.0 exists... | |
| == 2024-07-04 07:40:12,421 modules.py:633 INFO Module zlib/1.2.13-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-07-04 07:40:12,421 modules.py:656 INFO Result for existence check of zlib/1.2.13-GCCcore-13.2.0 module: True | |
| == 2024-07-04 07:40:12,421 modules.py:628 INFO Checking whether Tk/8.6.13-GCCcore-13.2.0 exists... | |
| == 2024-07-04 07:40:12,421 modules.py:633 INFO Module Tk/8.6.13-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-07-04 07:40:12,421 modules.py:656 INFO Result for existence check of Tk/8.6.13-GCCcore-13.2.0 module: True | |
| == 2024-07-04 07:40:12,421 modules.py:628 INFO Checking whether Tcl/8.6.13-GCCcore-13.2.0 exists... | |
| == 2024-07-04 07:40:12,421 modules.py:633 INFO Module Tcl/8.6.13-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-07-04 07:40:12,421 modules.py:656 INFO Result for existence check of Tcl/8.6.13-GCCcore-13.2.0 module: True | |
| == 2024-07-04 07:40:12,422 modules.py:628 INFO Checking whether libtirpc/1.3.4-GCCcore-13.2.0 exists... | |
| == 2024-07-04 07:40:12,422 modules.py:633 INFO Module libtirpc/1.3.4-GCCcore-13.2.0 exists (found in list of available modules) | |
| == 2024-07-04 07:40:12,422 modules.py:656 INFO Result for existence check of libtirpc/1.3.4-GCCcore-13.2.0 module: True | |
| == 2024-07-04 07:40:12,422 modules.py:628 INFO Checking whether GCCcore/13.2.0 exists... | |
| == 2024-07-04 07:40:12,422 modules.py:635 INFO Module GCCcore/13.2.0 not found in list of available modules, checking via 'module show'... | |
| == 2024-07-04 07:40:12,440 modules.py:656 INFO Result for existence check of GCCcore/13.2.0 module: True | |
| == 2024-07-04 07:40:12,508 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib') | |
| == 2024-07-04 07:40:12,508 environment.py:93 INFO Environment variable LD_LIBRARY_PATH_modshare set to /apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previously undefined) | |
| == 2024-07-04 07:40:12,599 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib') | |
| == 2024-07-04 07:40:12,599 environment.py:93 INFO Environment variable LD_LIBRARY_PATH_modshare set to /apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:1:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:1:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:1:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:1:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64') | |
| == 2024-07-04 07:40:12,654 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib:/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib:/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib:/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib') | |
| == 2024-07-04 07:40:12,654 environment.py:93 INFO Environment variable LD_LIBRARY_PATH_modshare set to /apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:1:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:1:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:1:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:1:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:1:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:1:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:1:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:1:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64') | |
| == 2024-07-04 07:40:12,698 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib:/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib:/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib:/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib') | |
| == 2024-07-04 07:40:12,698 environment.py:93 INFO Environment variable LD_LIBRARY_PATH_modshare set to /apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:1:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:1:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:1:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:1:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64 (previous value: '/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpciaccess/0.17-GCCcore-13.2.0/lib:1:/apps/easybuild/software/fontconfig/2.14.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/util-linux/2.39-GCCcore-13.2.0/lib:1:/apps/easybuild/software/ncurses/6.4-GCCcore-13.2.0/lib:1:/apps/easybuild/software/freetype/2.13.2-GCCcore-13.2.0/lib:1:/apps/easybuild/software/Brotli/1.1.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/libpng/1.6.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/expat/2.5.0-GCCcore-13.2.0/lib:1:/apps/easybuild/software/bzip2/1.0.8-GCCcore-13.2.0/lib:1:/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib:1:/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib:1:/apps/easybuild/software/GCCcore/13.2.0/lib64') | |
| == 2024-07-04 07:40:12,699 modules.py:628 INFO Checking whether GCCcore/13.2.0 exists... | |
| == 2024-07-04 07:40:12,699 modules.py:635 INFO Module GCCcore/13.2.0 not found in list of available modules, checking via 'module show'... | |
| == 2024-07-04 07:40:12,699 modules.py:656 INFO Result for existence check of GCCcore/13.2.0 module: True | |
| == 2024-07-04 07:40:12,699 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2024-07-04 07:40:12,701 compiler.py:362 INFO _set_optimal_architecture: using mcpu=native as optarch for AArch64/ARM. | |
| == 2024-07-04 07:40:12,702 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/include -I/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/include -I/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/include -I/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/include -I/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/include -I/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/include (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/include -I/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/include -I/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/include -I/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/include -I/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/include -I/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/include (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -mcpu=native -fno-math-errno -fPIC (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib -L/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib -L/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib -L/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib -L/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib -L/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib -L/apps/easybuild/software/GCCcore/13.2.0/lib64 -L/apps/easybuild/software/GCCcore/13.2.0/lib (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/libtirpc/1.3.4-GCCcore-13.2.0/lib -L/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/Tcl/8.6.13-GCCcore-13.2.0/lib -L/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/Tk/8.6.13-GCCcore-13.2.0/lib -L/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/zlib/1.2.13-GCCcore-13.2.0/lib -L/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/X11/20231019-GCCcore-13.2.0/lib -L/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib64 -L/apps/easybuild/software/binutils/2.40-GCCcore-13.2.0/lib -L/apps/easybuild/software/GCCcore/13.2.0/lib64 -L/apps/easybuild/software/GCCcore/13.2.0/lib (previously undefined) | |
| == 2024-07-04 07:40:12,703 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2024-07-04 07:40:12,704 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2024-07-04 07:40:12,704 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -mcpu=native (previously undefined) | |
| == 2024-07-04 07:40:12,704 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -mcpu=native (previously undefined) | |
| == 2024-07-04 07:40:12,704 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-07-04 07:40:12,704 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-07-04 07:40:12,704 easyblock.py:2141 INFO Using /dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0/gli/ as start dir | |
| == 2024-07-04 07:40:12,704 build_log.py:267 INFO configuring... | |
| == 2024-07-04 07:40:12,704 easyblock.py:3952 INFO Starting configure step | |
| == 2024-07-04 07:40:12,704 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-07-04 07:40:12,704 easyconfig.py:1721 INFO Template values: arch='aarch64', bitbucket_account='gli', builddir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0', cuda_cc_cmake='90', cuda_cc_semicolon_sep='9.0', cuda_cc_space_sep='9.0', cuda_compute_capabilities='9.0', cuda_sm_comma_sep='sm_90', cuda_sm_space_sep='sm_90', github_account='gli', installdir='/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0', module_name='GLI/4.5.31-GCCcore-13.2.0', name='GLI', nameletter='G', nameletterlower='g', namelower='gli', parallel='1', start_dir='/dev/shm/eb/GLI/4.5.31/GCCcore-13.2.0/gli/', sysroot='', toolchain_name='GCCcore', toolchain_version='13.2.0', version='4.5.31', version_major='4', version_major_minor='4.5', version_minor='5', versionprefix='', versionsuffix='' | |
| == 2024-07-04 07:40:12,704 easyblock.py:3960 INFO Running method configure_step part of step configure | |
| == 2024-07-04 07:40:12,704 run.py:247 INFO running cmd: cd src && sed -i -e "/ac_cv_c_zlib=.*with_zlib/s,},}/libz.so," configure && ./configure --prefix=/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0 CFLAGS=-DUSE_INTERP_RESULT LIBS=-ltirpc --with-zlib=$EBROOTZLIB/lib --with-zlibinclude=$EBROOTZLIB/include --with-tcllib=$EBROOTTCL/lib --with-tklib=$EBROOTTK/lib | |
| == 2024-07-04 07:40:12,897 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/ebinstall/develop/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd "cd src && sed -i -e "/ac_cv_c_zlib=.*with_zlib/s,},}/libz.so," configure && ./configure --prefix=/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0 CFLAGS=-DUSE_INTERP_RESULT LIBS=-ltirpc --with-zlib=$EBROOTZLIB/lib --with-zlibinclude=$EBROOTZLIB/include --with-tcllib=$EBROOTTCL/lib --with-tklib=$EBROOTTK/lib" exited with exit code 1 and output: | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking build system type... ./config.guess: unable to guess system type | |
| This script, last modified 2005-02-10, has failed to recognize | |
| the operating system you are using. It is advised that you | |
| download the most up to date version of the config scripts from | |
| ftp://ftp.gnu.org/pub/gnu/config/ | |
| If the version you run (./config.guess) is already up to date, please | |
| send the following data and any information you think might be | |
| pertinent to <config-patches@gnu.org> in order to provide the needed | |
| information to handle your system. | |
| config.guess timestamp = 2005-02-10 | |
| uname -m = aarch64 | |
| uname -r = 5.14.0-362.24.1.el9_3.aarch64+64k | |
| uname -s = Linux | |
| uname -v = #1 SMP PREEMPT_DYNAMIC Wed Mar 13 14:27:26 EDT 2024 | |
| /usr/bin/uname -p = aarch64 | |
| /bin/uname -X = | |
| hostinfo = | |
| /bin/universe = | |
| /usr/bin/arch -k = | |
| /bin/arch = aarch64 | |
| /usr/bin/oslevel = | |
| /usr/convex/getsysinfo = | |
| UNAME_MACHINE = aarch64 | |
| UNAME_RELEASE = 5.14.0-362.24.1.el9_3.aarch64+64k | |
| UNAME_SYSTEM = Linux | |
| UNAME_VERSION = #1 SMP PREEMPT_DYNAMIC Wed Mar 13 14:27:26 EDT 2024 | |
| configure: error: cannot guess build type; you must specify one | |
| (at easybuild/ebinstall/develop/easybuild-framework/easybuild/tools/run.py:682 in parse_cmd_output) | |
| == 2024-07-04 07:40:12,897 filetools.py:2013 INFO Removing lock /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock... | |
| == 2024-07-04 07:40:12,897 filetools.py:383 INFO Path /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock successfully removed. | |
| == 2024-07-04 07:40:12,898 filetools.py:2017 INFO Lock removed: /apps/easybuild/software/.locks/_apps_easybuild_software_GLI_4.5.31-GCCcore-13.2.0.lock | |
| == 2024-07-04 07:40:12,898 easyblock.py:4287 WARNING build failed (first 300 chars): cmd "cd src && sed -i -e "/ac_cv_c_zlib=.*with_zlib/s,},}/libz.so," configure && ./configure --prefix=/apps/easybuild/software/GLI/4.5.31-GCCcore-13.2.0 CFLAGS=-DUSE_INTERP_RESULT LIBS=-ltirpc --with-zlib=$EBROOTZLIB/lib --with-zlibinclude=$EBROOTZLIB/include --with-tcllib=$EBROOTTCL/lib --with-tkl | |
| == 2024-07-04 07:40:12,898 easyblock.py:328 INFO Closing log for application name GLI version 4.5.31 |
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