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miguelraz/gist:078c95c81303304c6dffdd2bdffabb54

Created October 7, 2017 04:48
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julia> println("Hola mundo!")
Hola mundo!
julia> Pkg.add("DifferentialEquations")
INFO: Initializing package repository /Users/isabel/.julia/v0.6
INFO: Cloning METADATA from https://github.com/JuliaLang/METADATA.jl
INFO: Cloning cache of AlgebraicDiffEq from https://github.com/JuliaDiffEq/AlgebraicDiffEq.jl.git
INFO: Cloning cache of BinDeps from https://github.com/JuliaLang/BinDeps.jl.git
INFO: Cloning cache of Calculus from https://github.com/johnmyleswhite/Calculus.jl.git
INFO: Cloning cache of ChunkedArrays from https://github.com/ChrisRackauckas/ChunkedArrays.jl.git
INFO: Cloning cache of Combinatorics from https://github.com/JuliaMath/Combinatorics.jl.git
INFO: Cloning cache of CommonSubexpressions from https://github.com/rdeits/CommonSubexpressions.jl.git
INFO: Cloning cache of Compat from https://github.com/JuliaLang/Compat.jl.git
INFO: Cloning cache of Conda from https://github.com/JuliaPy/Conda.jl.git
INFO: Cloning cache of DataStructures from https://github.com/JuliaCollections/DataStructures.jl.git
INFO: Cloning cache of DelayDiffEq from https://github.com/JuliaDiffEq/DelayDiffEq.jl.git
INFO: Cloning cache of DiffBase from https://github.com/JuliaDiff/DiffBase.jl.git
INFO: Cloning cache of DiffEqBase from https://github.com/JuliaDiffEq/DiffEqBase.jl.git
INFO: Cloning cache of DiffEqBiological from https://github.com/JuliaDiffEq/DiffEqBiological.jl.git
INFO: Cloning cache of DiffEqCallbacks from https://github.com/JuliaDiffEq/DiffEqCallbacks.jl.git
INFO: Cloning cache of DiffEqDevTools from https://github.com/JuliaDiffEq/DiffEqDevTools.jl.git
INFO: Cloning cache of DiffEqDiffTools from https://github.com/JuliaDiffEq/DiffEqDiffTools.jl.git
INFO: Cloning cache of DiffEqFinancial from https://github.com/JuliaDiffEq/DiffEqFinancial.jl.git
INFO: Cloning cache of DiffEqJump from https://github.com/JuliaDiffEq/DiffEqJump.jl.git
INFO: Cloning cache of DiffEqMonteCarlo from https://github.com/JuliaDiffEq/DiffEqMonteCarlo.jl.git
INFO: Cloning cache of DiffEqNoiseProcess from https://github.com/JuliaDiffEq/DiffEqNoiseProcess.jl.git
INFO: Cloning cache of DiffEqPDEBase from https://github.com/JuliaDiffEq/DiffEqPDEBase.jl.git
INFO: Cloning cache of DiffEqParamEstim from https://github.com/JuliaDiffEq/DiffEqParamEstim.jl.git
INFO: Cloning cache of DiffEqSensitivity from https://github.com/JuliaDiffEq/DiffEqSensitivity.jl.git
INFO: Cloning cache of DiffEqUncertainty from https://github.com/JuliaDiffEq/DiffEqUncertainty.jl.git
INFO: Cloning cache of DifferentialEquations from https://github.com/JuliaDiffEq/DifferentialEquations.jl.git
INFO: Cloning cache of DimensionalPlotRecipes from https://github.com/JuliaDiffEq/DimensionalPlotRecipes.jl.git
INFO: Cloning cache of Distances from https://github.com/JuliaStats/Distances.jl.git
INFO: Cloning cache of DistributedArrays from https://github.com/JuliaParallel/DistributedArrays.jl.git
INFO: Cloning cache of Distributions from https://github.com/JuliaStats/Distributions.jl.git
INFO: Cloning cache of EllipsisNotation from https://github.com/ChrisRackauckas/EllipsisNotation.jl.git
INFO: Cloning cache of FiniteElementDiffEq from https://github.com/JuliaDiffEq/FiniteElementDiffEq.jl.git
INFO: Cloning cache of ForwardDiff from https://github.com/JuliaDiff/ForwardDiff.jl.git
INFO: Cloning cache of GenericSVD from https://github.com/JuliaMath/GenericSVD.jl.git
INFO: Cloning cache of Hiccup from https://github.com/JunoLab/Hiccup.jl.git
INFO: Cloning cache of IterTools from https://github.com/JuliaCollections/IterTools.jl.git
INFO: Cloning cache of IterativeSolvers from https://github.com/JuliaMath/IterativeSolvers.jl.git
INFO: Cloning cache of JSON from https://github.com/JuliaIO/JSON.jl.git
INFO: Cloning cache of Juno from https://github.com/JunoLab/Juno.jl.git
INFO: Cloning cache of LearnBase from https://github.com/JuliaML/LearnBase.jl.git
INFO: Cloning cache of LineSearches from https://github.com/JuliaNLSolvers/LineSearches.jl.git
INFO: Cloning cache of LinearMaps from https://github.com/Jutho/LinearMaps.jl.git
INFO: Cloning cache of LossFunctions from https://github.com/JuliaML/LossFunctions.jl.git
INFO: Cloning cache of LsqFit from https://github.com/JuliaNLSolvers/LsqFit.jl.git
INFO: Cloning cache of MacroTools from https://github.com/MikeInnes/MacroTools.jl.git
INFO: Cloning cache of Media from https://github.com/JunoLab/Media.jl.git
INFO: Cloning cache of MuladdMacro from https://github.com/JuliaDiffEq/MuladdMacro.jl.git
INFO: Cloning cache of MultiScaleArrays from https://github.com/JuliaDiffEq/MultiScaleArrays.jl.git
INFO: Cloning cache of NLSolversBase from https://github.com/JuliaNLSolvers/NLSolversBase.jl.git
INFO: Cloning cache of NLsolve from https://github.com/JuliaNLSolvers/NLsolve.jl.git
INFO: Cloning cache of NaNMath from https://github.com/mlubin/NaNMath.jl.git
INFO: Cloning cache of Optim from https://github.com/JuliaNLSolvers/Optim.jl.git
INFO: Cloning cache of OptimBase from https://github.com/JuliaNLSolvers/OptimBase.jl.git
INFO: Cloning cache of OrdinaryDiffEq from https://github.com/JuliaDiffEq/OrdinaryDiffEq.jl.git
INFO: Cloning cache of PDMats from https://github.com/JuliaStats/PDMats.jl.git
INFO: Cloning cache of ParameterizedFunctions from https://github.com/JuliaDiffEq/ParameterizedFunctions.jl.git
INFO: Cloning cache of Parameters from https://github.com/mauro3/Parameters.jl.git
INFO: Cloning cache of PenaltyFunctions from https://github.com/JuliaML/PenaltyFunctions.jl.git
INFO: Cloning cache of Polynomials from https://github.com/JuliaMath/Polynomials.jl.git
INFO: Cloning cache of PositiveFactorizations from https://github.com/timholy/PositiveFactorizations.jl.git
INFO: Cloning cache of Primes from https://github.com/JuliaMath/Primes.jl.git
INFO: Cloning cache of QuadGK from https://github.com/JuliaMath/QuadGK.jl.git
INFO: Cloning cache of RandomNumbers from https://github.com/sunoru/RandomNumbers.jl.git
INFO: Cloning cache of RealInterface from https://github.com/jrevels/RealInterface.jl.git
INFO: Cloning cache of RecipesBase from https://github.com/JuliaPlots/RecipesBase.jl.git
INFO: Cloning cache of RecursiveArrayTools from https://github.com/JuliaDiffEq/RecursiveArrayTools.jl.git
INFO: Cloning cache of Reexport from https://github.com/simonster/Reexport.jl.git
INFO: Cloning cache of ResettableStacks from https://github.com/JuliaDiffEq/ResettableStacks.jl.git
INFO: Cloning cache of Rmath from https://github.com/JuliaStats/Rmath.jl.git
INFO: Cloning cache of Roots from https://github.com/JuliaMath/Roots.jl.git
INFO: Cloning cache of SHA from https://github.com/staticfloat/SHA.jl.git
INFO: Cloning cache of SimpleTraits from https://github.com/mauro3/SimpleTraits.jl.git
INFO: Cloning cache of SpecialFunctions from https://github.com/JuliaMath/SpecialFunctions.jl.git
INFO: Cloning cache of StaticArrays from https://github.com/JuliaArrays/StaticArrays.jl.git
INFO: Cloning cache of StatsBase from https://github.com/JuliaStats/StatsBase.jl.git
INFO: Cloning cache of StatsFuns from https://github.com/JuliaStats/StatsFuns.jl.git
INFO: Cloning cache of SteadyStateDiffEq from https://github.com/JuliaDiffEq/SteadyStateDiffEq.jl.git
INFO: Cloning cache of StochasticDiffEq from https://github.com/JuliaDiffEq/StochasticDiffEq.jl.git
INFO: Cloning cache of SugarBLAS from https://github.com/lopezm94/SugarBLAS.jl.git
INFO: Cloning cache of Sundials from https://github.com/JuliaDiffEq/Sundials.jl.git
INFO: Cloning cache of SymEngine from https://github.com/symengine/SymEngine.jl.git
INFO: Cloning cache of URIParser from https://github.com/JuliaWeb/URIParser.jl.git
INFO: Cloning cache of UnicodePlots from https://github.com/Evizero/UnicodePlots.jl.git
INFO: Cloning cache of VectorizedRoutines from https://github.com/ChrisRackauckas/VectorizedRoutines.jl.git
INFO: Installing AlgebraicDiffEq v0.1.0
INFO: Installing BinDeps v0.7.0
INFO: Installing Calculus v0.2.2
INFO: Installing ChunkedArrays v0.1.1
INFO: Installing Combinatorics v0.4.1
INFO: Installing CommonSubexpressions v0.0.1
INFO: Installing Compat v0.32.0
INFO: Installing Conda v0.7.0
INFO: Installing DataStructures v0.7.2
INFO: Installing DelayDiffEq v1.0.0
INFO: Installing DiffBase v0.2.0
INFO: Installing DiffEqBase v1.23.1
INFO: Installing DiffEqBiological v0.2.0
INFO: Installing DiffEqCallbacks v0.3.0
INFO: Installing DiffEqDevTools v0.9.5
INFO: Installing DiffEqDiffTools v0.0.2
INFO: Installing DiffEqFinancial v0.3.0
INFO: Installing DiffEqJump v0.5.1
INFO: Installing DiffEqMonteCarlo v0.9.0
INFO: Installing DiffEqNoiseProcess v0.5.0
INFO: Installing DiffEqPDEBase v0.3.4
INFO: Installing DiffEqParamEstim v0.6.0
INFO: Installing DiffEqSensitivity v0.3.0
INFO: Installing DiffEqUncertainty v0.0.1
INFO: Installing DifferentialEquations v2.3.0
INFO: Installing DimensionalPlotRecipes v0.0.2
INFO: Installing Distances v0.5.0
INFO: Installing DistributedArrays v0.4.0
INFO: Installing Distributions v0.14.2
INFO: Installing EllipsisNotation v0.2.2
INFO: Installing FiniteElementDiffEq v0.4.0
INFO: Installing ForwardDiff v0.5.0
INFO: Installing GenericSVD v0.1.0
INFO: Installing Hiccup v0.1.1
INFO: Installing IterTools v0.1.0
INFO: Installing IterativeSolvers v0.4.1
INFO: Installing JSON v0.15.1
INFO: Installing Juno v0.3.1
INFO: Installing LearnBase v0.1.6
INFO: Installing LineSearches v2.2.1
INFO: Installing LinearMaps v1.0.2
INFO: Installing LossFunctions v0.2.0
INFO: Installing LsqFit v0.3.0
INFO: Installing MacroTools v0.3.7
INFO: Installing Media v0.3.0
INFO: Installing MuladdMacro v0.0.2
INFO: Installing MultiScaleArrays v0.4.0
INFO: Installing NLSolversBase v2.1.3
INFO: Installing NLsolve v0.11.0
INFO: Installing NaNMath v0.2.6
INFO: Installing Optim v0.9.3
INFO: Installing OptimBase v0.1.0
INFO: Installing OrdinaryDiffEq v2.19.1
INFO: Installing PDMats v0.7.0
INFO: Installing ParameterizedFunctions v2.2.0
INFO: Installing Parameters v0.8.0
INFO: Installing PenaltyFunctions v0.0.1
INFO: Installing Polynomials v0.1.6
INFO: Installing PositiveFactorizations v0.1.0
INFO: Installing Primes v0.2.0
INFO: Installing QuadGK v0.1.3
INFO: Installing RandomNumbers v0.1.0
INFO: Installing RealInterface v0.0.3
INFO: Installing RecipesBase v0.2.3
INFO: Installing RecursiveArrayTools v0.12.3
INFO: Installing Reexport v0.0.3
INFO: Installing ResettableStacks v0.2.0
INFO: Installing Rmath v0.3.0
INFO: Installing Roots v0.4.1
INFO: Installing SHA v0.5.1
INFO: Installing SimpleTraits v0.5.1
INFO: Installing SpecialFunctions v0.3.3
INFO: Installing StaticArrays v0.6.3
INFO: Installing StatsBase v0.19.0
INFO: Installing StatsFuns v0.5.0
INFO: Installing SteadyStateDiffEq v0.1.0
INFO: Installing StochasticDiffEq v2.11.1
INFO: Installing SugarBLAS v0.0.4
INFO: Installing Sundials v0.14.0
INFO: Installing SymEngine v0.2.0
INFO: Installing URIParser v0.2.0
INFO: Installing UnicodePlots v0.2.5
INFO: Installing VectorizedRoutines v0.0.2
INFO: Building Conda
INFO: Building SpecialFunctions
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/SpecialFunctions/deps/downloads
INFO: Downloading file https://github.com/ararslan/openspecfun-builder/releases/download/v0.5.3/libopenspecfun-0.5.3-osx-x86_64.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 629 0 629 0 0 579 0 --:--:-- 0:00:01 --:--:-- 579
100 1084k 100 1084k 0 0 286k 0 0:00:03 0:00:03 --:--:-- 699k
INFO: Done downloading file https://github.com/ararslan/openspecfun-builder/releases/download/v0.5.3/libopenspecfun-0.5.3-osx-x86_64.tar.gz
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/SpecialFunctions
INFO: Directory /Users/isabel/.julia/v0.6/SpecialFunctions already created
INFO: Building RandomNumbers
WARNING: AES-NI will not be compiled.
INFO: Building Rmath
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Rmath/deps/downloads
INFO: Downloading file https://github.com/JuliaLang/Rmath-julia/archive/v0.2.0.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 129 0 129 0 0 147 0 --:--:-- --:--:-- --:--:-- 147
100 155k 0 155k 0 0 77039 0 --:--:-- 0:00:02 --:--:-- 329k
INFO: Done downloading file https://github.com/JuliaLang/Rmath-julia/archive/v0.2.0.tar.gz
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Rmath/deps/src
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Rmath/deps
INFO: Directory /Users/isabel/.julia/v0.6/Rmath/deps already created
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Rmath/deps/usr/lib
INFO: Changing Directory to /Users/isabel/.julia/v0.6/Rmath/deps/src/Rmath-julia-0.2.0
INFO: Changing Directory to /Users/isabel/.julia/v0.6/Rmath/deps/src/Rmath-julia-0.2.0
INFO: Building Sundials
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Sundials/deps/downloads
INFO: Downloading file http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sundials-2.5.0.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 8102k 100 8102k 0 0 1930k 0 0:00:04 0:00:04 --:--:-- 1930k
INFO: Done downloading file http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sundials-2.5.0.tar.gz
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Sundials/deps/src
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Sundials/deps
INFO: Directory /Users/isabel/.julia/v0.6/Sundials/deps already created
INFO: Changing Directory to /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0
configure: WARNING: cannot find MPI-C compiler
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
INFO: Changing Directory to /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0
/bin/sh: line 0: cd: /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0/src/nvec_ser: No such file or directory
make[1]: *** [shared] Error 1
/bin/sh: line 0: cd: /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0: No such file or directory
==============================[ ERROR: Sundials ]===============================
LoadError: Provider BinDeps.BuildProcess failed to satisfy dependency libsundials_cvodes
while loading /Users/isabel/.julia/v0.6/Sundials/deps/build.jl, in expression starting on line 37
================================================================================
ERROR: ParameterizedFunctions is not an installed package
build!(::Array{String,1}, ::Set{Any}, ::String) at ./pkg/entry.jl:623
build!(::Array{String,1}, ::Set{Any}, ::String) at ./pkg/entry.jl:624
build!(::Array{String,1}, ::Dict{Any,Any}, ::Set{Any}) at ./pkg/entry.jl:635
build(::Array{String,1}) at ./pkg/entry.jl:650
resolve(::Dict{String,Base.Pkg.Types.VersionSet}, ::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, ::Dict{String,Tuple{VersionNumber,Bool}}, ::Dict{String,Base.Pkg.Types.Fixed}, ::Dict{String,VersionNumber}, ::Set{String}) at ./pkg/entry.jl:570
resolve(::Dict{String,Base.Pkg.Types.VersionSet}, ::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, ::Dict{String,Tuple{VersionNumber,Bool}}, ::Dict{String,Base.Pkg.Types.Fixed}) at ./pkg/entry.jl:479
edit(::Function, ::String, ::Base.Pkg.Types.VersionSet, ::Vararg{Base.Pkg.Types.VersionSet,N} where N) at ./pkg/entry.jl:30
(::Base.Pkg.Entry.##1#3{String,Base.Pkg.Types.VersionSet})() at ./task.jl:335
Stacktrace:
[1] sync_end() at ./task.jl:287
[2] macro expansion at ./task.jl:303 [inlined]
[3] add(::String, ::Base.Pkg.Types.VersionSet) at ./pkg/entry.jl:51
[4] (::Base.Pkg.Dir.##4#7{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}})() at ./pkg/dir.jl:36
[5] cd(::Base.Pkg.Dir.##4#7{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}}, ::String) at ./file.jl:70
[6] #cd#1(::Array{Any,1}, ::Function, ::Function, ::String, ::Vararg{String,N} where N) at ./pkg/dir.jl:36
[7] add(::String) at ./pkg/pkg.jl:117
julia> using DifferentialEquations
ERROR: ArgumentError: Module DifferentialEquations not found in current path.
Run `Pkg.add("DifferentialEquations")` to install the DifferentialEquations package.
Stacktrace:
[1] _require(::Symbol) at ./loading.jl:428
[2] require(::Symbol) at ./loading.jl:398
julia> Pkg.add("DifferentialEquations")
INFO: Installing AlgebraicDiffEq v0.1.0
INFO: Installing Calculus v0.2.2
INFO: Installing ChunkedArrays v0.1.1
INFO: Installing Combinatorics v0.4.1
INFO: Installing CommonSubexpressions v0.0.1
INFO: Installing Conda v0.7.0
INFO: Installing DataStructures v0.7.2
INFO: Installing DelayDiffEq v1.0.0
INFO: Installing DiffBase v0.2.0
INFO: Installing DiffEqBase v1.23.1
INFO: Installing DiffEqBiological v0.2.0
INFO: Installing DiffEqCallbacks v0.3.0
INFO: Installing DiffEqDevTools v0.9.5
INFO: Installing DiffEqDiffTools v0.0.2
INFO: Installing DiffEqFinancial v0.3.0
INFO: Installing DiffEqJump v0.5.1
INFO: Installing DiffEqMonteCarlo v0.9.0
INFO: Installing DiffEqNoiseProcess v0.5.0
INFO: Installing DiffEqPDEBase v0.3.4
INFO: Installing DiffEqParamEstim v0.6.0
INFO: Installing DiffEqSensitivity v0.3.0
INFO: Installing DiffEqUncertainty v0.0.1
INFO: Installing DifferentialEquations v2.3.0
INFO: Installing DimensionalPlotRecipes v0.0.2
INFO: Installing DistributedArrays v0.4.0
INFO: Installing Distributions v0.14.2
INFO: Installing EllipsisNotation v0.2.2
INFO: Installing FiniteElementDiffEq v0.4.0
INFO: Installing ForwardDiff v0.5.0
INFO: Installing GenericSVD v0.1.0
INFO: Installing IterativeSolvers v0.4.1
INFO: Installing LearnBase v0.1.6
INFO: Installing LineSearches v2.2.1
INFO: Installing LinearMaps v1.0.2
INFO: Installing LossFunctions v0.2.0
INFO: Installing LsqFit v0.3.0
INFO: Installing MuladdMacro v0.0.2
INFO: Installing MultiScaleArrays v0.4.0
INFO: Installing NLSolversBase v2.1.3
INFO: Installing NLsolve v0.11.0
INFO: Installing NaNMath v0.2.6
INFO: Installing Optim v0.9.3
INFO: Installing OptimBase v0.1.0
INFO: Installing OrdinaryDiffEq v2.19.1
INFO: Installing PDMats v0.7.0
INFO: Installing ParameterizedFunctions v2.2.0
INFO: Installing Parameters v0.8.0
INFO: Installing PenaltyFunctions v0.0.1
INFO: Installing Polynomials v0.1.6
INFO: Installing PositiveFactorizations v0.1.0
INFO: Installing Primes v0.2.0
INFO: Installing QuadGK v0.1.3
INFO: Installing RandomNumbers v0.1.0
INFO: Installing RealInterface v0.0.3
INFO: Installing RecipesBase v0.2.3
INFO: Installing RecursiveArrayTools v0.12.3
INFO: Installing ResettableStacks v0.2.0
INFO: Installing Rmath v0.3.0
INFO: Installing Roots v0.4.1
INFO: Installing SimpleTraits v0.5.1
INFO: Installing SpecialFunctions v0.3.3
INFO: Installing StaticArrays v0.6.3
INFO: Installing StatsBase v0.19.0
INFO: Installing StatsFuns v0.5.0
INFO: Installing SteadyStateDiffEq v0.1.0
INFO: Installing StochasticDiffEq v2.11.1
INFO: Installing SugarBLAS v0.0.4
INFO: Installing Sundials v0.14.0
INFO: Installing SymEngine v0.2.0
INFO: Installing UnicodePlots v0.2.5
INFO: Installing VectorizedRoutines v0.0.2
INFO: Building Conda
INFO: Building SpecialFunctions
INFO: Building RandomNumbers
WARNING: AES-NI will not be compiled.
INFO: Building Rmath
INFO: Building Sundials
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Sundials/deps/downloads
INFO: Directory /Users/isabel/.julia/v0.6/Sundials/deps/downloads already created
INFO: Downloading file http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sundials-2.5.0.tar.gz
INFO: Done downloading file http://ftp.mcs.anl.gov/pub/petsc/externalpackages/sundials-2.5.0.tar.gz
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Sundials/deps/src
INFO: Directory /Users/isabel/.julia/v0.6/Sundials/deps/src already created
INFO: Attempting to Create directory /Users/isabel/.julia/v0.6/Sundials/deps
INFO: Directory /Users/isabel/.julia/v0.6/Sundials/deps already created
INFO: Path /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0 already created
INFO: Changing Directory to /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0
configure: WARNING: cannot find MPI-C compiler
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
INFO: Changing Directory to /Users/isabel/.julia/v0.6/Sundials/deps/src/sundials-2.5.0
./cvode.c:4139:21: warning: format string is not a string literal
(potentially insecure) [-Wformat-security]
fprintf(stderr, msgfmt);
^~~~~~
./cvode.c:4139:21: note: treat the string as an argument to avoid this
fprintf(stderr, msgfmt);
^
"%s",
1 warning generated.
./cvodes.c:8961:21: warning: format string is not a string literal
(potentially insecure) [-Wformat-security]
fprintf(stderr, msg);
^~~
./cvodes.c:8961:21: note: treat the string as an argument to avoid this
fprintf(stderr, msg);
^
"%s",
1 warning generated.
./ida.c:3381:21: warning: format string is not a string literal
(potentially insecure) [-Wformat-security]
fprintf(stderr, msgfmt);
^~~~~~
./ida.c:3381:21: note: treat the string as an argument to avoid this
fprintf(stderr, msgfmt);
^
"%s",
1 warning generated.
./idas.c:7182:21: warning: format string is not a string literal
(potentially insecure) [-Wformat-security]
fprintf(stderr, msgfmt);
^~~~~~
./idas.c:7182:21: note: treat the string as an argument to avoid this
fprintf(stderr, msgfmt);
^
"%s",
1 warning generated.
./kinsol.c:1879:21: warning: format string is not a string literal
(potentially insecure) [-Wformat-security]
fprintf(stderr, msgfmt);
^~~~~~
./kinsol.c:1879:21: note: treat the string as an argument to avoid this
fprintf(stderr, msgfmt);
^
"%s",
1 warning generated.
INFO: Building SymEngine
INFO: Downloading miniconda installer ...
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 21.3M 100 21.3M 0 0 949k 0 0:00:23 0:00:23 --:--:-- 426k
INFO: Installing miniconda ...
Python 2.7.13 :: Continuum Analytics, Inc.
Warning: 'defaults' already in 'channels' list, moving to the top
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/Users/isabel/.julia/v0.6/SymEngine/deps/usr/bin/conda", line 11, in <module>
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/cli/main.py", line 182, in main
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/exceptions.py", line 644, in conda_exception_handler
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/exceptions.py", line 634, in handle_exception
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/exceptions.py", line 596, in print_unexpected_error_message
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/cli/main_info.py", line 221, in get_info_dict
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/base/context.py", line 285, in root_writable
File "/Users/isabel/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages/conda/gateways/disk/test.py", line 66, in prefix_is_writable
conda.CondaError: Unable to determine if prefix '/Users/isabel/.julia/v0.6/Conda/deps/usr' is writable.
==============================[ ERROR: SymEngine ]===============================
LoadError: failed process: Process(setenv(`/Users/isabel/.julia/v0.6/SymEngine/deps/usr/bin/conda install -y symengine=0.3.0`,String["XPC_FLAGS=0x0", "PATH=/Applications/Julia-0.6.app/Contents/Resources/julia/bin:/Applications/Julia-0.6.app/Contents/Resources/julia/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/local/git/bin", "PWD=/Users/isabel", "XPC_SERVICE_NAME=0", "TERM_PROGRAM=Apple_Terminal", "SHELL=/bin/bash", "__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0", "LC_CTYPE=UTF-8", "TMPDIR=/var/folders/h8/j6s5pq_n14n5jjwxn_kldxbw0000gn/T/", "TK_LIBRARY=/System/Library/Frameworks/Tk.framework/Versions/8.5/Resources/Scripts", "CONDARC=/Users/isabel/.julia/v0.6/SymEngine/deps/usr/condarc-julia.yml", "FONTCONFIG_PATH=/Applications/Julia-0.6.app/Contents/Resources/julia/etc/fonts", "SHLVL=0", "LOGNAME=isabel", "CONDA_PREFIX=/Users/isabel/.julia/v0.6/SymEngine/deps/usr", "TERM_SESSION_ID=F6098DCC-6BD7-4469-9DD8-534E39097E01", "SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.AGNSwjlOl6/Listeners", "CONDA_DEFAULT_ENV=/Users/isabel/.julia/v0.6/SymEngine/deps/usr", "Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.KlsIt18D8l/Render", "USER=isabel", "TERM=xterm-256color", "HOME=/Users/isabel", "TERM_PROGRAM_VERSION=361.1", "OPENBLAS_MAIN_FREE=1"]), ProcessExited(1)) [1]
while loading /Users/isabel/.julia/v0.6/SymEngine/deps/build.jl, in expression starting on line 50
=================================================================================
ERROR: DimensionalPlotRecipes is not an installed package
build!(::Array{String,1}, ::Set{Any}, ::String) at ./pkg/entry.jl:623
build!(::Array{String,1}, ::Set{Any}, ::String) at ./pkg/entry.jl:624
build!(::Array{String,1}, ::Dict{Any,Any}, ::Set{Any}) at ./pkg/entry.jl:635
build(::Array{String,1}) at ./pkg/entry.jl:650
resolve(::Dict{String,Base.Pkg.Types.VersionSet}, ::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, ::Dict{String,Tuple{VersionNumber,Bool}}, ::Dict{String,Base.Pkg.Types.Fixed}, ::Dict{String,VersionNumber}, ::Set{String}) at ./pkg/entry.jl:570
resolve(::Dict{String,Base.Pkg.Types.VersionSet}, ::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, ::Dict{String,Tuple{VersionNumber,Bool}}, ::Dict{String,Base.Pkg.Types.Fixed}) at ./pkg/entry.jl:479
edit(::Function, ::String, ::Base.Pkg.Types.VersionSet, ::Vararg{Base.Pkg.Types.VersionSet,N} where N) at ./pkg/entry.jl:30
(::Base.Pkg.Entry.##1#3{String,Base.Pkg.Types.VersionSet})() at ./task.jl:335
Stacktrace:
[1] sync_end() at ./task.jl:287
[2] macro expansion at ./task.jl:303 [inlined]
[3] add(::String, ::Base.Pkg.Types.VersionSet) at ./pkg/entry.jl:51
[4] (::Base.Pkg.Dir.##4#7{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}})() at ./pkg/dir.jl:36
[5] cd(::Base.Pkg.Dir.##4#7{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}}, ::String) at ./file.jl:70
[6] #cd#1(::Array{Any,1}, ::Function, ::Function, ::String, ::Vararg{String,N} where N) at ./pkg/dir.jl:36
[7] add(::String) at ./pkg/pkg.jl:117
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