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Chris Rackauckas vs Pycall - Round 1
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| julia> Pkg.test("PyDSTool") | |
| INFO: Computing test dependencies for PyDSTool... | |
| INFO: No packages to install, update or remove | |
| INFO: Testing PyDSTool | |
| Warning: matplotlib failed to import properly and so is not | |
| providing a graphing interface | |
| 2.026891 seconds (1.63 M allocations: 72.990 MB, 5.09% gc time) | |
| LP Point found | |
| LP Point found | |
| PyCont curve EQ1 (type EP-C) | |
| Using model: Calcium channel model | |
| Model Info | |
| ---------- | |
| Variables : v, w | |
| Parameters: gca, vca, c, i, vl, v1, v2, gl | |
| Continuation Parameters | |
| ----------------------- | |
| name = EQ1 | |
| auxpars = [] | |
| freepars = ['i'] | |
| MaxNumPoints = 450 | |
| MaxCorrIters = 5 | |
| MaxTestIters = 10 | |
| MaxStepSize = 2 | |
| MinStepSize = 1e-05 | |
| StepSize = 2 | |
| VarTol = 1e-06 | |
| FuncTol = 1e-06 | |
| TestTol = 0.0001 | |
| LocBifPoints = ['B', 'SP', 'BP', 'LP', 'H'] | |
| verbosity = 1 | |
| ClosedCurve = 50 | |
| SaveJacobian = False | |
| SaveEigen = True | |
| Corrector = <bound method EquilibriumCurve._MoorePenrose of PyCont curve EQ1 (type EP-C)> | |
| UseAuto = False | |
| StopAtPoints = [] | |
| SPOut = None | |
| Special Points | |
| -------------- | |
| P1, P2, LP1, LP2 | |
| PyCont curve SN1 (type LP-C) | |
| Using model: Calcium channel model | |
| Model Info | |
| ---------- | |
| Variables : v, w | |
| Parameters: gca, vca, c, i, vl, v1, v2, gl | |
| Continuation Parameters | |
| ----------------------- | |
| name = SN1 | |
| auxpars = [] | |
| freepars = ['i', 'gca'] | |
| MaxNumPoints = 200 | |
| MaxCorrIters = 5 | |
| MaxTestIters = 10 | |
| MaxStepSize = 2 | |
| MinStepSize = 1e-05 | |
| StepSize = 2 | |
| VarTol = 1e-06 | |
| FuncTol = 1e-06 | |
| TestTol = 0.0001 | |
| LocBifPoints = ['CP'] | |
| verbosity = 1 | |
| ClosedCurve = 50 | |
| SaveJacobian = False | |
| SaveEigen = True | |
| Corrector = <bound method FoldCurve._MoorePenrose of PyCont curve SN1 (type LP-C)> | |
| UseAuto = False | |
| StopAtPoints = [] | |
| SPOut = None | |
| Special Points | |
| -------------- | |
| P1, P2 | |
| 25.663171 seconds (1.06 M allocations: 45.910 MB, 0.05% gc time) | |
| LP Point found | |
| LP Point found | |
| PyCont curve EQ1 (type EP-C) | |
| Using model: Calcium | |
| Model Info | |
| ---------- | |
| Variables : v, w | |
| Parameters: gca, vca, c, i, vl, v1, v2, gl | |
| Continuation Parameters | |
| ----------------------- | |
| name = EQ1 | |
| auxpars = [] | |
| freepars = ['i'] | |
| MaxNumPoints = 450 | |
| MaxCorrIters = 5 | |
| MaxTestIters = 10 | |
| MaxStepSize = 2 | |
| MinStepSize = 1e-05 | |
| StepSize = 2 | |
| VarTol = 1e-06 | |
| FuncTol = 1e-06 | |
| TestTol = 0.0001 | |
| LocBifPoints = ['B', 'SP', 'BP', 'LP', 'H'] | |
| verbosity = 1 | |
| ClosedCurve = 50 | |
| SaveJacobian = False | |
| SaveEigen = True | |
| Corrector = <bound method EquilibriumCurve._MoorePenrose of PyCont curve EQ1 (type EP-C)> | |
| UseAuto = False | |
| StopAtPoints = [] | |
| SPOut = None | |
| Special Points | |
| -------------- | |
| P1, P2, LP1, LP2 | |
| 8.823612 seconds (1.75 M allocations: 74.445 MB, 0.20% gc time) | |
| elapsed time: 37.052887826 seconds | |
| INFO: PyDSTool tests passed | |
| INFO: No packages to install, update or remove |
Author
miguelraz
commented
Apr 5, 2017
julia> Pkg.build("DifferentialEquations")
INFO: Building Rmath
INFO: Building Sundials
INFO: Building Conda
INFO: Building SymEngine
INFO: Building PyCall
Fetching package metadata .........
Solving package specifications: ..........
# All requested packages already installed.
# packages in environment at /home/mrg/.julia/v0.6/Conda/deps/usr:
#
numpy 1.12.1 py27_blas_openblas_200 [blas_openblas] conda-forge
INFO: PyCall is using /home/mrg/.julia/v0.6/Conda/deps/usr/bin/python (Python 2.7.13) at /home/mrg/.julia/v0.6/Conda/deps/usr/bin/python, libpython = /home/mrg/.julia/v0.6/Conda/deps/usr/lib/libpython2.7
INFO: /home/mrg/.julia/v0.6/PyCall/deps/deps.jl has not changed
INFO: /home/mrg/.julia/v0.6/PyCall/deps/PYTHON has not changed
INFO: Building PyDSTool
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /home/mrg/.julia/v0.6/Conda/deps/usr:
The following packages will be downloaded:
package | build
---------------------------|-----------------
pip-9.0.1 | py27_0 1.6 MB conda-forge
The following packages will be SUPERCEDED by a higher-priority channel:
pip: 9.0.1-py27_1 --> 9.0.1-py27_0 conda-forge
Fetching packages ...
pip-9.0.1-py27 100% |################################################################| Time: 0:00:02 833.52 kB/s
Extracting packages ...
[ COMPLETE ]|###################################################################################| 100%
Unlinking packages ...
[ COMPLETE ]|###################################################################################| 100%
Linking packages ...
[ COMPLETE ]|###################################################################################| 100%
Requirement already satisfied: pydstool in /home/mrg/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages
Requirement already satisfied: six in /home/mrg/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages (from pydstool)
Requirement already satisfied: scipy>=0.9 in /home/mrg/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages (from pydstool)
Requirement already satisfied: numpy>=1.6 in /home/mrg/.julia/v0.6/Conda/deps/usr/lib/python2.7/site-packages (from pydstool)
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