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May 24, 2017 19:18
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convert Rnw to Rmd
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perl -pe 's|\\Robject{(.+?)}|`\1`|g' | | |
perl -pe 's|\\Rcode{(.+?)}|`\1`|g' | | |
perl -pe 's|\\Rclass{(.+?)}|*\1*|g' | | |
perl -pe 's|\\Rfunction{(.+?)}|*\1*|g' | | |
perl -pe 's|\\texttt{(.+?)}|`\1`|g' | | |
perl -pe 's|\\textit{(.+?)}|*\1*|g' | | |
perl -pe 's|\\textbf{(.+?)}|**\1**|g' | | |
perl -pe 's|\\emph{(.+?)}|*\1*|g' | | |
perl -pe 's|<<|```{r |g' | | |
perl -pe 's|>>=|}|g' | | |
perl -pe 's|@|```|g' | | |
perl -pe 's|\\section{(.+?)}|# \1|g' | | |
perl -pe 's|\\subsection{(.+?)}|## \1|g' | | |
perl -pe 's|\\subsubsection{(.+?)}|### \1|g' | | |
perl -pe 's|\\Biocexptpkg{(.+?)}|`r Biocexptpkg("\1")`|g' | | |
perl -pe 's|\\Biocpkg{(.+?)}|`r Biocpkg("\1")`|g' | | |
perl -pe 's|\\cite{(.+?)}|[@\1]|g' | | |
perl -pe 's|\\url{(.+?)}|<\1>|g' | | |
perl -pe 's|\\label{.+?}||g' | | |
perl -pe 's|\\deseqtwo{}|DESeq2|g' | |
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Thank you, very handy. I wrapped it up in a short script.