mikisvaz

2023-03-28T20:09:37.031+0200 [INFO]  Terraform version: 1.2.9
2023-03-28T20:09:37.031+0200 [DEBUG] using github.com/hashicorp/go-tfe v1.0.0
2023-03-28T20:09:37.031+0200 [DEBUG] using github.com/hashicorp/hcl/v2 v2.12.0
2023-03-28T20:09:37.031+0200 [DEBUG] using github.com/hashicorp/terraform-config-inspect v0.0.0-20210209133302-4fd17a0faac2
2023-03-28T20:09:37.031+0200 [DEBUG] using github.com/hashicorp/terraform-svchost v0.0.0-20200729002733-f050f53b9734
2023-03-28T20:09:37.031+0200 [DEBUG] using github.com/zclconf/go-cty v1.11.0
2023-03-28T20:09:37.031+0200 [INFO]  Go runtime version: go1.18.1
2023-03-28T20:09:37.031+0200 [INFO]  CLI args: []string{"terraform", "destroy"}
2023-03-28T20:09:37.032+0200 [DEBUG] Attempting to open CLI config file: /home/miki/.terraformrc
2023-03-28T20:09:37.032+0200 [DEBUG] File doesn't exist, but doesn't need to. Ignoring.

mikisvaz

        ### This loop is run for each pair

        # sign_evidence_pmids will hold the list of PMIDS support each sign: +,
        # -, and ~ (unknown or not specified)
        sign_evidence_pmids = {"+" => [], "-" => [], "~" => []}
        Misc.zip_fields(values.reverse).each do |e,s|
          s = "" if s.nil?
          sign_evidence_pmids[s] = e.split(";")
        end

mikisvaz

require 'rbbt-util'
require 'rbbt/workflow'
require 'rbbt/workflow/remote_workflow'

module HTSBenchmark

  Rbbt.claim Rbbt.share.data.studies.GIAB do |directory|
    `wget <url1.bam> -O #{directory}/data/sample1.bam`
    `wget <url2.bam> -O #{directory}/data/sample2.bam`
    `wget <url3.bam> -O #{directory}/data/sample3.bam`

mikisvaz

  extension :bam
  dep HTS, :BAM_rescore, 
    :fastq1 => :placeholder, :fastq2 => :placeholder, :reference => :placeholder,
    :sample_name => :placeholder,
    :platform_unit => :placeholder,
    :read_group_name => :placeholder,
    :sequencing_center => "CNAG",
    :platform => 'Illuimna',
    :library_name => 'LN',
    :interval_list => Bellmunt.interval_list do |jobname,options|

mikisvaz

module Sequence


  def self.ablated_domains(mi, organism=Organism.default_code("Hsa"))
    require 'rbbt/sources/InterPro'
    @@ensp2uni ||= Organism.identifiers(organism).index :target => "UniProt/SwissProt Accession", :persist => true, :fields => ["Ensembl Protein ID"], :unnamed => true
    @@domain_info ||= InterPro.protein_domains.tsv :persist => true, :unnamed => true
    return [] unless mi =~ /:.*(\d+)(FrameShift|\*)$/
    pos = $1.to_i
    protein = mi.partition(":")[0]

mikisvaz

model Intersect
  def self.intersect_streams_read(io, sep=":")
    line = io.gets.strip
    parts = line.split(sep)
    chr, start, eend, *rest = parts
    [line,chr, start.to_i, eend.to_i, rest]
  end

  def self.intersect_streams(f1, f2, out, sep=":")
    finish = false

mikisvaz

---
 public/javascripts/culerity.js |   14 +++++++++-----
 1 files changed, 9 insertions(+), 5 deletions(-)

diff --git a/public/javascripts/culerity.js b/public/javascripts/culerity.js
index 2db12c9..d12df5e 100644
--- a/public/javascripts/culerity.js
+++ b/public/javascripts/culerity.js

mikisvaz

Gem::Specification.new do |s|
  s.name = %q{simplews}
  s.version = "1.3.3"

  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
  s.authors = ["Miguel Vazquez"]
  s.date = %q{2009-09-22}
  s.description = %q{This defines a class that can simplifies creating Web Services. It inherits from soap2r's  SOAP::RPC::StandaloneServer and provides a few enhancements, the most important the fact that it is able to produce the WSDL automatically.}
  s.email = ["mikisvaz@yahoo.com"]
  s.extra_rdoc_files = ["History.txt", "Manifest.txt", "PostInstall.txt", "README.rdoc", "website/index.txt"]