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millerh1/available_genomes.tsv

Created August 26, 2021 02:59
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Available Genomes from UCSC with effective genome sizes
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available_genomes.tsv
UCSC_orgID description nibPath organism defaultPos active orderKey genome scientificName htmlPath hgNearOk hgPbOk sourceName taxId genes_available year eff_genome_size_36bp eff_genome_size_50bp eff_genome_size_75bp eff_genome_size_100bp eff_genome_size_125bp eff_genome_size_150bp eff_genome_size_200bp eff_genome_size_250bp eff_genome_size_300bp genome_length homer_anno_available
ailMel1 Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) /gbdb/ailMel1 Panda GL192818.1:558576-566855 1 16070 Panda Ailuropoda melanoleuca /gbdb/ailMel1/html/description.html 0 0 BGI-Shenzhen AilMel 1.0 Dec. 2009 9646 TRUE 2009 2131884815 2195257147 2167233843 2206501040 2213941269 2196290908 2233702932 2212959190 2168863899 2299509015 FALSE
allMis1 Aug. 2012 (allMis0.2/allMis1) /gbdb/allMis1 American alligator JH731472:504271-884586 1 1425 American alligator Alligator mississippiensis /gbdb/allMis1/html/description.html 0 0 International Crocodilian Genomes Working Group 8496 TRUE 2012 2050346072 2080458921 2117005123 2101224009 2132575305 2148090938 2122242508 2138519849 2073919991 2174259888 FALSE
anoCar1 Feb. 2007 (Broad/anoCar1) /gbdb/anoCar1 Lizard scaffold_72:3056494-3141055 1 12445 Lizard Anolis carolinensis /gbdb/anoCar1/html/description.html 0 0 Broad Institute AnoCar (1.0) 28377 TRUE 2007 1417044902 1480323391 1546382680 1625802590 1631352518 1655584417 1673791275 1695639336 1429423814 1781602899 FALSE
anoCar2 May 2010 (Broad AnoCar2.0/anoCar2) /gbdb/anoCar2 Lizard chr5:23430070-23476097 1 12444 Lizard Anolis carolinensis /gbdb/anoCar2/html/description.html 0 0 Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 28377 TRUE 2010 1389177514 1456431506 1515016862 1588732450 1591937036 1622306821 1630816189 1655957653 1410398964 1799143587 FALSE
anoGam1 Feb. 2003 (IAGEC MOZ2/anoGam1) /gbdb/anoGam1/nib A. gambiae chr2R:6479796-6482329 1 1010 A. gambiae Anopheles gambiae /gbdb/anoGam1/html/description.html 0 0 IAGEC v.MOZ2 7165 FALSE 2003 228806781 239085911 244518328 245185247 252674917 253436649 258819420 258983747 236816357 287805703 TRUE
anoGam3 Oct. 2006 (AgamP3/anoGam3) /gbdb/anoGam3 A. gambiae chr2R:6479796-6482329 1 1009 A. gambiae Anopheles gambiae /gbdb/anoGam3/html/description.html 0 0 The International Consortium for the Sequencing of Anopheles Genome 180454 TRUE 2006 220918016 230728133 235078254 235159739 241476157 242124773 246208275 244765059 229341784 264974304 FALSE
apiMel1 July 2004 (Baylor 1.2/apiMel1) /gbdb/apiMel1 A. mellifera GroupUn.5651:1001-6000 1 1053 A. mellifera Apis mellifera /gbdb/apiMel1/html/description.html 0 0 Baylor HGSC Amel_1.2 7460 FALSE 2004 207405330 203131691 209839383 205236926 208542883 204652578 204067897 208635328 206347479 213394811 FALSE
apiMel2 Jan. 2005 (Baylor 2.0/apiMel2) /gbdb/apiMel2 A. mellifera GroupUn:47426601-47431800 1 1052 A. mellifera Apis mellifera /gbdb/apiMel2/html/description.html 0 0 Baylor HGSC Amel_2.0 7460 FALSE 2005 218666455 214920599 224970254 221201832 225439413 223569258 222977284 229239253 219173912 502497597 TRUE
aplCal1 Sept. 2008 (Broad 2.0/aplCal1) /gbdb/aplCal1 Sea hare scaffold_829:133,504-180,407 1 19205 Sea hare Aplysia californica /gbdb/aplCal1/html/description.html 0 0 Broad v. Aplcal2.0 6500 FALSE 2008 530137715 554440247 586238703 600961231 613700879 603676863 612168947 620594166 541755810 715806041 TRUE
aptMan1 Jun. 2015 (MPI-EVA AptMant0/aptMan1) /gbdb/aptMan1 Brown kiwi NW_013995860v1:31591035-31601034 1 2715 Brown kiwi Apteryx australis /gbdb/aptMan1/html/description.html 0 0 Max-Plank Institute for Evolutionary Anthropology AptMant0 202946 TRUE 2015 1177784823 1226057798 1230055839 1229636655 1234686670 1249559914 1233717066 1252129915 1193968169 1523986457 FALSE
aquChr2 Oct. 2014 (aquChr-1.0.2/aquChr2) /gbdb/aquChr2 Golden eagle KN265877v1:49183-52524 1 7664 Golden eagle Aquila chrysaetos canadensis /gbdb/aquChr2/html/description.html 0 0 WashU 216574 FALSE 2014 1164404249 1156712632 1168818108 1185561777 1190703152 1182220769 1166510059 1180673397 1173652820 1192725744 FALSE
balAcu1 Oct. 2013 (BalAcu1.0/balAcu1) /gbdb/balAcu1 Minke whale KI537194:1947619-1969416 1 13475 Minke whale Balaenoptera acutorostrata scammoni /gbdb/balAcu1/html/description.html 0 0 Korea Ocean Research & Development Institute 310752 TRUE 2013 2112071444 2155112740 2180121651 2190476262 2188849474 2230236795 2209564062 2219675236 2113102628 2431687698 FALSE
bisBis1 Oct. 2014 (Bison_UMD1.0/bisBis1) /gbdb/bisBis1 Bison KN265006v1:10821934-10865801 1 2325 Bison Bison bison bison /gbdb/bisBis1/html/description.html 0 0 U. Maryland 43346 TRUE 2014 2267069341 2419640251 2538054415 2595159374 2632262785 2623239154 2672320877 2634682960 2355724438 2953622319 FALSE
bosTau2 Mar. 2005 (Baylor 2.0/bosTau2) /gbdb/bosTau2 Cow SCAFFOLD10671:4650-8779 1 3634 Cow Bos taurus /gbdb/bosTau2/html/description.html 0 0 Baylor Btau_2.0 9913 FALSE 2005 2329344724 2441804553 2571839434 2669823128 2705832969 2752241996 2797448229 2794793943 2418357085 3525488607 FALSE
bosTau3 Aug. 2006 (Baylor 3.1/bosTau3) /gbdb/bosTau3 Cow chr28:550,588-553,344 1 3633 Cow Bos taurus /gbdb/bosTau3/html/description.html 0 0 Baylor Release 3.1 9913 TRUE 2006 2241557013 2325999958 2431887911 2506021572 2557117255 2558496858 2604066412 2565016477 2289263563 2902896901 FALSE
bosTau4 Oct. 2007 (Baylor 4.0/bosTau4) /gbdb/bosTau4 Cow chr3:21083267-21232422 1 3632 Cow Bos taurus /gbdb/bosTau4/html/description.html 0 0 Baylor Release 4.0 9913 TRUE 2007 2242114023 2324751216 2432915224 2505486073 2557715270 2555642463 2605331096 2567932463 2289676670 2917974530 FALSE
bosTau6 Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) /gbdb/bosTau6 Cow chr3:21,592,157-21,596,916 1 3629 Cow Bos taurus /gbdb/bosTau6/html/description.html 0 0 UMD_3.1 (NCBI project 10708, accession GCA_000003055.3) 9913 TRUE 2009 2293112811 2374942898 2488370764 2574268197 2598720867 2602201085 2658558791 2606500772 2359642998 2670422299 FALSE
bosTau7 Oct. 2011 (Baylor Btau_4.6.1/bosTau7) /gbdb/bosTau7 Cow chr22:56,647,062-58,290,728 1 3628 Cow Bos taurus /gbdb/bosTau7/html/description.html 0 0 Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) 9913 TRUE 2011 2274117571 2357686963 2473479436 2544869333 2611117300 2612594940 2654443004 2619456192 2336314274 2981119579 FALSE
bosTau8 Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) /gbdb/bosTau8 Cow chr1:2772575-2921534 1 3627 Cow Bos taurus /gbdb/bosTau8/html/description.html 0 0 University of Maryland Bos_taurus_UMD_3.1.1 9913 TRUE 2014 2292802036 2373776585 2488370764 2573101765 2598454772 2602201085 2658210687 2606199623 2359313930 2670044500 FALSE
bosTau9 Apr. 2018 (ARS-UCD1.2/bosTau9) /gbdb/bosTau9 Cow chr6:85405597-85664387 1 3626 Cow Bos taurus /gbdb/bosTau9/html/description.html 0 0 USDA ARS 9913 TRUE 2018 2293463344 2389028197 2505552684 2584925434 2621783782 2656100513 2687997195 2643797853 2366195648 2715853792 FALSE
braFlo1 Mar. 2006 (JGI 1.0/braFlo1) /gbdb/braFlo1 Lancelet chrUn:619013791-619054719 1 12025 Lancelet Branchiostoma floridae /gbdb/braFlo1/html/description.html 0 0 JGI v.1.0 (March 2006) 7739 FALSE 2006 636143585 677021481 722935343 748038138 760030946 787744785 799617480 796434230 663919597 926386587 FALSE
caeJap1 Mar. 2008 (WUGSC 3.0.2/caeJap1) /gbdb/caeJap1 C. japonica chrUn:36686834-36727776 1 3058 C. japonica Caenorhabditis japonica /gbdb/caeJap1/html/description.html 0 0 Washington University School of Medicine GSC C. remanei 3.0.2 281687 FALSE 2008 103333765 109726675 119526286 123164631 123019011 128193041 130478045 134228539 108574767 156378573 FALSE
caePb1 Jan. 2007 (WUGSC 4.0/caePb1) /gbdb/caePb1 C. brenneri chrUn:97956213-97960870 1 3012 C. brenneri Caenorhabditis brenneri /gbdb/caePb1/html/description.html 0 0 Washington University School of Medicine GSC Caenorhabditis n. sp. PB2801 135651 FALSE 2007 156686626 160338666 165479744 167889586 172312999 172510098 176562061 177415324 159973937 207333000 FALSE
caePb2 Feb. 2008 (WUGSC 6.0.1/caePb2) /gbdb/caePb2 C. brenneri chrUn:117559143-117563800 1 3011 C. brenneri Caenorhabditis brenneri /gbdb/caePb2/html/description.html 0 0 Washington University School of Medicine GSC Caenorhabditis brenneri (PB2801) 6.0.1 135651 FALSE 2008 154710369 157494432 162562845 163446453 168874343 167690047 171175609 169612469 157840750 194283334 FALSE
caeRem2 Mar. 2006 (WUGSC 1.0/caeRem2) /gbdb/caeRem2 C. remanei chrUn:103531185-103538203 1 3067 C. remanei Caenorhabditis remanei /gbdb/caeRem2/html/description.html 0 0 Washington University School of Medicine GSC C. remanei 1.0 31234 FALSE 2006 127606316 132837637 135758584 138636162 140655848 139584225 146394447 147789848 130588094 161944676 FALSE
caeRem3 May 2007 (WUGSC 15.0.1/caeRem3) /gbdb/caeRem3 C. remanei chrUn:119043304-119068959 1 3066 C. remanei Caenorhabditis remanei /gbdb/caeRem3/html/description.html 0 0 Washington University School of Medicine GSC C. remanei 15.0.1 31234 FALSE 2007 123324914 127611846 130885788 132055741 135500273 132638520 137672543 139263125 126474823 149111736 FALSE
calJac1 June 2007 (WUGSC 2.0.2/calJac1) /gbdb/calJac1 Marmoset Contig614:446,042-454,396 1 13085 Marmoset Callithrix jacchus /gbdb/calJac1/html/description.html 0 0 WUSTL 2.0.2 9483 TRUE 2007 2552193958 2624529583 2779087789 2818484350 2861860060 2888466618 2954940822 2939329283 2626511325 3029401840 FALSE
calJac3 March 2009 (WUGSC 3.2/calJac3) /gbdb/calJac3 Marmoset chr15:67439781-67471107 1 13084 Marmoset Callithrix jacchus /gbdb/calJac3/html/description.html 0 0 WUSTL 3.2 (GCA_000004665.1) 9483 TRUE 2009 2497313343 2556258051 2663961277 2723618943 2715456780 2764314712 2812395258 2789576847 2566192560 2914958544 FALSE
calMil1 Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) /gbdb/calMil1 Elephant shark KI635875:1934002-2090480 1 5525 Elephant shark Callorhinchus milii /gbdb/calMil1/html/description.html 0 0 Institute of Molecular and Cell Biology, Singapore 7868 TRUE 2013 860896194 902994705 898374786 924841952 930514710 935378925 940800842 934265699 883662526 974498586 FALSE
canFam1 July 2004 (Broad/canFam1) /gbdb/canFam1/nib Dog chr14:10666612-10673232 1 4665 Dog Canis lupus familiaris /gbdb/canFam1/html/description.html 0 0 Broad Institute v. 1.0 9615 FALSE 2004 2210677924 2258351151 2311010068 2321456417 2325377897 2347473463 2358457505 2363087707 2268493993 2519795863 FALSE
canFam2 May 2005 (Broad/canFam2) /gbdb/canFam2 Dog chr14:11072309-11078928 1 4664 Dog Canis lupus familiaris /gbdb/canFam2/html/description.html 0 0 Broad Institute v. 2.0 9615 FALSE 2005 2210685070 2257393434 2316618420 2334606191 2331953754 2354439258 2361252532 2382933437 2260205407 2531673953 FALSE
canFam3 Sep. 2011 (Broad CanFam3.1/canFam3) /gbdb/canFam3 Dog chr14:8114295-8120760 1 4663 Dog Canis lupus familiaris /gbdb/canFam3/html/description.html 0 0 Broad CanFam3.1 (GCA_000002285.2) 9615 TRUE 2011 2210414284 2257374609 2315694385 2334739596 2329901805 2348476339 2369170925 2380921277 2261321008 2410976875 TRUE
cavPor3 Feb. 2008 (Broad/cavPor3) /gbdb/cavPor3 Guinea pig scaffold_15:19047434-19048046 1 7859 Guinea pig Cavia porcellus /gbdb/cavPor3/html/description.html 0 0 Broad Institute cavPor3 10141 TRUE 2008 2382909399 2484827511 2518361991 2562970590 2532291103 2543153403 2600205495 2619687078 2448522968 2723219641 FALSE
ce10 Oct. 2010 (WS220/ce10) /gbdb/ce10 C. elegans chrII:14646301-14667800 1 3025 C. elegans Caenorhabditis elegans /gbdb/ce10/html/description.html 0 0 Washington University School of Medicine GSC and Sanger Institute WS220 6239 TRUE 2010 95355104 95156190 96995949 98287299 96793198 98879728 98769409 101168708 95379959 100286070 TRUE
ce11 Feb. 2013 (WBcel235/ce11) /gbdb/ce11 C. elegans chrII:14646376-14667875 1 3024 C. elegans Caenorhabditis elegans /gbdb/ce11/html/description.html 0 0 C. elegans Sequencing Consortium WBcel235 (GCA_000002985.3) 6239 TRUE 2013 95419636 95159402 96945370 98259898 96743752 98721103 98672558 101271756 95377181 100286401 TRUE
ce2 Mar. 2004 (WS120/ce2) /gbdb/ce2/nib C. elegans chrII:14642289-14671631 1 3033 C. elegans Caenorhabditis elegans /gbdb/ce2/html/description.html 1 0 WormBase v. WS120 6239 FALSE 2004 95373739 95155477 97024134 98305194 96763672 98877615 98765565 101106282 95321203 100291769 FALSE
ce6 May 2008 (WS190/ce6) /gbdb/ce6 C. elegans chrII:14646344-14667746 1 3029 C. elegans Caenorhabditis elegans /gbdb/ce6/html/description.html 1 0 Washington University School of Medicine GSC and Sanger Institute WS190 6239 TRUE 2008 95355104 95144060 97009298 98291106 96774004 98859319 98765181 101104671 95321203 100281426 TRUE
cerSim1 May 2012 (CerSimSim1.0/cerSim1) /gbdb/cerSim1 White rhinoceros JH767724:13224473-13745226 1 23265 White rhinoceros Ceratotherium simum /gbdb/cerSim1/html/description.html 0 0 Broad Institute 73337 TRUE 2012 2268955258 2313880578 2324723334 2348343024 2371010480 2401061766 2343704602 2380192130 2297087083 2464367180 FALSE
chlSab2 Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) /gbdb/chlSab2 Green monkey chr17:59951119-60172671 1 7779 Green monkey Chlorocebus sabaeus /gbdb/chlSab2/html/description.html 0 0 Vervet Genomics Consortium GCA_000409795.2 60711 TRUE 2014 2541202927 2630382002 2747726414 2737089388 2737593504 2767805853 2742139752 2744900903 2632870400 2789656328 FALSE
choHof1 Jul. 2008 (Broad/choHof1) /gbdb/choHof1 Sloth scaffold_5701:20408-28976 1 19460 Sloth Choloepus hoffmanni /gbdb/choHof1/html/description.html 0 0 Broad Institute choHof1 9358 TRUE 2008 1719428848 1789076153 1854749044 1867731792 1902998628 1936772629 1959886323 1952049726 1764807994 2458927620 FALSE
chrPic1 Dec. 2011 (v3.0.1/chrPic1) /gbdb/chrPic1 Painted turtle JH584429:9332958-10048518 1 16065 Painted turtle Chrysemys picta bellii /gbdb/chrPic1/html/description.html 0 0 International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) 8478 FALSE 2011 1960423598 2044466797 2086416793 2140833530 2187442325 2200045543 2193775555 2210553254 2010502015 2589745704 FALSE
ci1 Dec. 2002 (JGI 1.0/ci1) /gbdb/ci1/nib C. intestinalis Scaffold_490:1-51949 1 3046 C. intestinalis Ciona intestinalis /gbdb/ci1/html/description.html 0 0 JGI v1.0 7719 FALSE 2002 105832452 110419440 111914070 111892622 111829095 111152503 111752849 112545730 107625445 116731843 FALSE
ci2 Mar. 2005 (JGI 2.1/ci2) /gbdb/ci2/nib C. intestinalis chr01p:3,108,502-3,170,702 1 3045 C. intestinalis Ciona intestinalis /gbdb/ci2/html/description.html 0 0 JGI v2.0 7719 FALSE 2005 113697526 118148940 125129644 128990070 128616212 132848619 136912391 138986555 116782141 173499994 TRUE
ci3 Apr. 2011 (Kyoto KH/ci3) /gbdb/ci3 C. intestinalis chr1:5020502-5030501 1 3044 C. intestinalis Ciona intestinalis /gbdb/ci3/html/description.html 0 0 Kyoto KH 7719 TRUE 2011 105382235 109814072 111080608 111313621 111260833 110498538 111505188 111992300 107049762 115227500 TRUE
criGri1 Jul. 2013 (C_griseus_v1.0/criGri1) /gbdb/criGri1 Chinese hamster KE382584:3834159-3887734 1 3350 Chinese hamster Cricetulus griseus /gbdb/criGri1/html/description.html 0 0 Beijing Genomics Institution-Shenzhen 10029 TRUE 2013 2133141678 2207922711 2279971770 2260664696 2275902040 2259099069 2314723838 2276704379 2195195239 2360146428 FALSE
criGriChoV1 Aug. 2011 (CHO K1 cell line/criGriChoV1) /gbdb/criGriChoV1 Chinese hamster NW_003613923v1:714339-726966 1 3349 Chinese hamster Cricetulus griseus /gbdb/criGriChoV1/html/description.html 0 0 Beijing Genomics Institute 10029 TRUE 2011 2139939897 2207527604 2292923556 2272353895 2262642984 2290759845 2298583450 2262446224 2215062296 2399786748 FALSE
criGriChoV2 Jun. 2017 (CHOK1S_HZDv1/criGriChoV2) /gbdb/criGriChoV2 Chinese hamster LT883664v1:74,691,929-74,715,718 1 3348 Chinese hamster Cricetulus griseus /gbdb/criGriChoV2/html/description.html 0 0 Eagle Genomics Ltd 10029 TRUE 2017 2143500611 2229928446 2321005934 2301625706 2296990119 2336020222 2334650860 2310525845 2206700714 2358167390 FALSE
danRer10 Sep. 2014 (GRCz10/danRer10) /gbdb/danRer10 Zebrafish chr10:33840892-34129251 1 26173 Zebrafish Danio rerio /gbdb/danRer10/html/description.html 0 0 Genome Reference Consortium Zebrafish Build 10 (GCA_000002035.3) 7955 TRUE 2014 1116583298 1195445541 1251132611 1280188944 1289282795 1312207019 1321355041 1339205109 1159419084 1371719383 TRUE
danRer11 May 2017 (GRCz11/danRer11) /gbdb/danRer11 Zebrafish chr6:43426669-43433274 1 26172 Zebrafish Danio rerio /gbdb/danRer11/html/description.html 0 0 Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4) 7955 TRUE 2017 1173935214 1268137461 1338942595 1386687502 1412543888 1435756128 1457125802 1494151429 1226095927 1679203469 TRUE
danRer3 May 2005 (Zv5/danRer3) /gbdb/danRer3 Zebrafish chr13:15,409,989-15,425,511 1 26178 Zebrafish Danio rerio /gbdb/danRer3/html/description.html 0 0 Sanger Centre, Danio rerio Sequencing Project Zv5 7955 FALSE 2005 1129582363 1222474184 1290373021 1339287580 1366478967 1376115728 1408995615 1419414555 1174846602 1644032962 FALSE
danRer4 Mar. 2006 (Zv6/danRer4) /gbdb/danRer4 Zebrafish chr13:16,747,248-16,763,118 1 26177 Zebrafish Danio rerio /gbdb/danRer4/html/description.html 0 0 Sanger Centre, Danio rerio Sequencing Project Zv6 7955 FALSE 2006 1144412004 1239521080 1323660583 1357366310 1383923039 1401522220 1429743715 1454224309 1198756316 1774660131 FALSE
danRer5 July 2007 (Zv7/danRer5) /gbdb/danRer5 Zebrafish chr13:14,786,820-14,801,993 1 26176 Zebrafish Danio rerio /gbdb/danRer5/html/description.html 0 0 Wellcome Trust Sanger Institute, Zv7 assembly 7955 TRUE 2007 1121343017 1204903533 1264909432 1303348568 1319323628 1346512674 1355836673 1380364990 1164755104 1440582308 FALSE
danRer6 Dec. 2008 (Zv8/danRer6) /gbdb/danRer6 Zebrafish chr13:25,051,748-25,071,333 1 26175 Zebrafish Danio rerio /gbdb/danRer6/html/description.html 0 0 Wellcome Trust Sanger Institute, Zv8 assembly (CAAK00000000.5) 7955 TRUE 2008 1126612734 1220477545 1286334736 1323343439 1341434098 1355550939 1387706092 1405179451 1176783771 1512402306 FALSE
danRer7 Jul. 2010 (Zv9/danRer7) /gbdb/danRer7 Zebrafish chr13:25004825-25082273 1 26174 Zebrafish Danio rerio /gbdb/danRer7/html/description.html 0 0 Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 7955 TRUE 2010 1125715499 1209406210 1267788788 1309885838 1325196801 1333973201 1349694686 1372384225 1173009214 1412464843 TRUE
dasNov3 Dec. 2011 (Baylor/dasNov3) /gbdb/dasNov3 Armadillo JH564832:1503619-1555676 1 1725 Armadillo Dasypus novemcinctus /gbdb/dasNov3/html/description.html 0 0 Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 9361 TRUE 2011 2843346405 3025249941 3168828598 3224911116 3260910405 3263428366 3265530562 3306913093 2945869377 3631522711 FALSE
dipOrd1 Jul. 2008 (Broad/dipOrd1) /gbdb/dipOrd1 Kangaroo rat scaffold_7358:2192-33995 1 11010 Kangaroo rat Dipodomys ordii /gbdb/dipOrd1/html/description.html 0 0 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 10020 TRUE 2008 1460656221 1555719173 1656775775 1656981328 1727371654 1709725009 1779195727 1784730121 1514789497 2158502098 FALSE
dm1 Jan. 2003 (BDGP R3/dm1) /gbdb/dm1/nib D. melanogaster chr2L:827700-845800 1 4070 D. melanogaster Drosophila melanogaster /gbdb/dm1/html/description.html 1 0 BDGP v. 3 7227 FALSE 2003 119117968 120659605 121269160 122596173 120940589 121718493 123006597 123143096 118591930 129323838 FALSE
dm2 Apr. 2004 (BDGP R4/dm2) /gbdb/dm2/nib D. melanogaster chr2L:825964-851061 1 4069 D. melanogaster Drosophila melanogaster /gbdb/dm2/html/description.html 1 0 BDGP v. 4 / DHGP v. 3.2 7227 FALSE 2004 119033934 120760804 121469123 122605835 120872740 121801597 123379647 123239828 118803145 132596453 FALSE
dm3 Apr. 2006 (BDGP R5/dm3) /gbdb/dm3 D. melanogaster chr2L:826001-851000 1 4068 D. melanogaster Drosophila melanogaster /gbdb/dm3/html/description.html 1 0 BDGP Release 5 7227 TRUE 2006 125812421 130428510 135004387 139647132 140782688 144307658 148523810 151901455 127225685 168736537 FALSE
dm6 Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) /gbdb/dm6 D. melanogaster chr2L:826,001-851,000 1 4067 D. melanogaster Drosophila melanogaster /gbdb/dm6/html/description.html 0 0 The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics (GCA_000001215.4) 7227 TRUE 2014 122884485 125494459 127324557 129789773 129118944 129946309 132533877 132912060 122869207 143726002 TRUE
dp2 Aug. 2003 (Baylor freeze1/dp2) /gbdb/dp2/nib D. pseudoobscura Contig1006_Contig943:3363975-3378814 1 4095 D. pseudoobscura Drosophila pseudoobscura /gbdb/dp2/html/description.html 0 0 Baylor HGSC Freeze 1 7237 FALSE 2003 127577098 126467806 127210863 129665994 131012957 129726179 130561724 130735557 127677842 135845121 FALSE
dp3 Nov. 2004 (FlyBase 1.03/dp3) /gbdb/dp3 D. pseudoobscura chr4_group3:5603001-5614000 1 4094 D. pseudoobscura Drosophila pseudoobscura /gbdb/dp3/html/description.html 0 0 FlyBase Release 1.03 7237 FALSE 2004 130584745 130511634 131024522 133850188 135201601 134676436 134838258 135639326 131560762 141079253 FALSE
droAna1 July 2004 (TIGR/droAna1) /gbdb/droAna1 D. ananassae 2448876:2700001-2725000 1 4015 D. ananassae Drosophila ananassae /gbdb/droAna1/html/description.html 0 0 TIGR 15 July 2004 7217 FALSE 2004 143858905 150953823 153328058 154038196 157511707 161112616 161985934 162620457 147504511 167097297 FALSE
droAna2 Aug. 2005 (Agencourt prelim/droAna2) /gbdb/droAna2 D. ananassae scaffold_12916:2717000-2741384 1 4014 D. ananassae Drosophila ananassae /gbdb/droAna2/html/description.html 0 0 Agencourt 1 August 2005 7217 FALSE 2005 155255161 165066313 171054862 175410322 182870259 187530462 191440498 194622551 160565158 231676663 FALSE
droEre1 Aug. 2005 (Agencourt prelim/droEre1) /gbdb/droEre1 D. erecta scaffold_4929:882464-907886 1 4035 D. erecta Drosophila erecta /gbdb/droEre1/html/description.html 0 0 Agencourt 1 Aug 2005 7220 FALSE 2005 126542928 128726017 132051715 131646059 134288722 134763474 138345174 138846811 127367860 152862534 FALSE
droGri1 Aug. 2005 (Agencourt prelim/droGri1) /gbdb/droGri1 D. grimshawi scaffold_24862:854980-869643 1 4050 D. grimshawi Drosophila grimshawi /gbdb/droGri1/html/description.html 0 0 Agencourt 1 Aug 2005 7222 FALSE 2005 147282110 149589335 159181084 164288279 176344654 178445968 188314287 195710996 150055516 226113271 FALSE
droMoj1 Aug. 2004 (Agencourt prelim/droMoj1) /gbdb/droMoj1 D. mojavensis contig_2959:30001-44626 1 4080 D. mojavensis Drosophila mojavensis /gbdb/droMoj1/html/description.html 0 0 Agencourt 11 Aug 2004 7230 FALSE 2004 154141988 159061037 161763564 164886416 163972811 167688893 168675545 169493532 155796102 189814987 FALSE
droMoj2 Aug. 2005 (Agencourt prelim/droMoj2) /gbdb/droMoj2 D. mojavensis scaffold_6500:23838548-23875233 1 4079 D. mojavensis Drosophila mojavensis /gbdb/droMoj2/html/description.html 0 0 Agencourt 1 August 2005 7230 FALSE 2005 152252355 157976522 159944738 163098605 162992360 167150189 170143875 171054983 154556827 194270144 FALSE
droPer1 Oct. 2005 (Broad/droPer1) /gbdb/droPer1 D. persimilis super_1:7109001-7125000 1 4085 D. persimilis Drosophila persimilis /gbdb/droPer1/html/description.html 0 0 Broad 28 Oct. 2005 7234 FALSE 2005 139283575 144656871 146484137 152962920 160000019 159156963 164318549 166528768 143081228 188374079 FALSE
droSec1 Oct. 2005 (Broad/droSec1) /gbdb/droSec1 D. sechellia super_14:795001-815000 1 4105 D. sechellia Drosophila sechellia /gbdb/droSec1/html/description.html 0 0 Broad 28 Oct. 2005 7238 FALSE 2005 122951131 126823451 129808710 132948367 134446009 136671636 141305693 142009070 125349957 166577145 FALSE
droSim1 Apr. 2005 (WUGSC mosaic 1.0/droSim1) /gbdb/droSim1 D. simulans chr2L:827,150-853,526 1 4110 D. simulans Drosophila simulans /gbdb/droSim1/html/description.html 0 0 WUSTL version 1.0 7240 FALSE 2005 118803732 118803273 121727468 123843013 124069873 126629968 128135020 130469792 119187807 142420719 FALSE
droVir1 July 2004 (Agencourt prelim/droVir1) /gbdb/droVir1 D. virilis scaffold_6:5128001-5158000 1 4125 D. virilis Drosophila virilis /gbdb/droVir1/html/description.html 0 0 Agencourt 12 July 2004 7244 FALSE 2004 158377862 163562049 166631268 167408414 169508602 172176200 172252796 171772722 163352532 196642585 FALSE
droVir2 Aug. 2005 (Agencourt prelim/droVir2) /gbdb/droVir2 D. virilis scaffold_12963:19375824-19416317 1 4124 D. virilis Drosophila virilis /gbdb/droVir2/html/description.html 0 0 Agencourt 1 August 2005 7244 FALSE 2005 157154533 163126686 167040412 169267591 172310574 174278533 175578975 174315681 163313495 206998770 FALSE
droYak1 Apr. 2004 (WUGSC 1.0/droYak1) /gbdb/droYak1/nib D. yakuba chr2L:827700-845800 1 4135 D. yakuba Drosophila yakuba /gbdb/droYak1/html/description.html 0 0 WUSTL version 1.0 7245 FALSE 2004 137390878 141858188 150296005 152781341 156698612 157074744 160784120 164819663 142208504 179076649 FALSE
droYak2 Nov. 2005 (WUGSC 7.1/droYak2) /gbdb/droYak2 D. yakuba chr2L:809001-825000 1 4134 D. yakuba Drosophila yakuba /gbdb/droYak2/html/description.html 0 0 WUSTL version 2.0 7245 FALSE 2005 135087763 138964748 147800167 149812659 152389770 153591873 156335495 159321507 138945655 168663877 FALSE
eboVir3 Sierra Leone 2014 (G3683/KM034562.1/eboVir3) /gbdb/eboVir3 Ebola virus KM034562v1:1-18957 1 5058 Ebola virus Filoviridae ebolavirus /gbdb/eboVir3/html/description.html 0 0 West Africa 01 June 2014 EBOV/G3683/KM034562.1 186538 FALSE 2014 18912 18915 18995 18708 18745 18911 18971 18579 18909 18957 FALSE
echTel1 July 2005 (Broad/echTel1) /gbdb/echTel1 Tenrec scaffold_287419:9706-28119 1 20175 Tenrec Echinops telfairi /gbdb/echTel1/html/description.html 0 0 Broad July 2005 9371 TRUE 2005 1948799048 2025926306 2054812113 2082302167 2108880976 2100601073 2118797264 2133994969 2028890046 3823724728 FALSE
echTel2 Nov. 2012 (Broad/echTel2) /gbdb/echTel2 Tenrec JH980304:37472293-37479623 1 20174 Tenrec Echinops telfairi /gbdb/echTel2/html/description.html 0 0 Broad/EchTel2.0 9371 TRUE 2012 2469203555 2549159621 2553104096 2610545071 2663841375 2599018019 2685622156 2659929921 2551915604 2947024286 FALSE
equCab1 Jan. 2007 (Broad/equCab1) /gbdb/equCab1 Horse chr11:51,777,319-51,834,862 1 8685 Horse Equus caballus /gbdb/equCab1/html/description.html 0 0 Broad Institute equCab1 (1.0) 9796 TRUE 2007 2265459146 2342116052 2348604116 2389548720 2383716739 2409532297 2436259143 2437129098 2342307688 2462493800 FALSE
equCab2 Sep. 2007 (Broad/equCab2) /gbdb/equCab2 Horse chr11:52,970,942-53,028,811 1 8684 Horse Equus caballus /gbdb/equCab2/html/description.html 0 0 Broad Institute EquCab2 9796 TRUE 2007 2270032871 2344716946 2356335734 2396216274 2381883805 2418541433 2433753469 2452368848 2347269064 2484532062 FALSE
equCab3 Jan. 2018 (EquCab3.0/equCab3) /gbdb/equCab3 Horse chr11:53320263-53382039 1 8683 Horse Equus caballus /gbdb/equCab3/html/description.html 0 0 University of Louisville 9796 TRUE 2018 2299092191 2365156725 2351121965 2410668088 2407320359 2427645881 2446638921 2435702340 2366493563 2506966135 FALSE
eriEur1 June 2006 (Broad/eriEur1) /gbdb/eriEur1 Hedgehog scaffold_373857:3457-13237 1 8315 Hedgehog Erinaceus europaeus /gbdb/eriEur1/html/description.html 0 0 Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 9365 TRUE 2006 1638659625 1770276970 1863844826 1921655453 1977082026 1976982886 2047569835 2033482154 1746322217 3367787358 FALSE
eriEur2 May 2012 (EriEur2.0/eriEur2) /gbdb/eriEur2 Hedgehog JH835538:1253255-1266498 1 8314 Hedgehog Erinaceus europaeus /gbdb/eriEur2/html/description.html 0 0 Broad Institute EriEur2.0 9365 TRUE 2012 2034684751 2198564700 2293643014 2316952981 2324770353 2313013015 2363186451 2386518443 2154369057 2715720925 FALSE
felCat3 Mar. 2006 (Broad/felCat3) /gbdb/felCat3 Cat scaffold_216010:162,840-178,893 1 3243 Cat Felis catus /gbdb/felCat3/html/description.html 0 0 Broad Release 3 9685 TRUE 2006 1468704376 1549439384 1547515102 1576566627 1602333433 1602413959 1639465295 1672047808 1511563778 4045535322 FALSE
felCat4 Dec. 2008 (NHGRI/GTB V17e/felCat4) /gbdb/felCat4 Cat chrA2:64650765-64656835 1 3242 Cat Felis catus /gbdb/felCat4/html/description.html 0 0 NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000) 9685 TRUE 2008 1852677429 1937211975 1971712839 1977092798 1976272001 1959778845 1987259215 2043864172 1891128403 3160303948 FALSE
felCat5 Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) /gbdb/felCat5 Cat chrA2:53225502-53231571 1 3241 Cat Felis catus /gbdb/felCat5/html/description.html 0 0 International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) 9685 TRUE 2011 2227052500 2295875999 2357214867 2351729278 2393512020 2347752750 2374494622 2412131416 2249888068 2455541136 FALSE
felCat8 Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) /gbdb/felCat8 Cat chrA2:53484451-53597660 1 3240 Cat Felis catus /gbdb/felCat8/html/description.html 0 0 International Cat Genome Sequencing Consortium 9685 TRUE 2014 2290573388 2368997739 2440575465 2452645507 2495404470 2455479555 2505447773 2539218230 2313452992 2641342258 FALSE
felCat9 Nov. 2017 (Felis_catus_9.0/felCat9) /gbdb/felCat9 Cat chrA2:53333898-53447862 1 3239 Cat Felis catus /gbdb/felCat9/html/description.html 0 0 Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine 9685 TRUE 2017 2305026054 2352800598 2422704340 2452699800 2485074609 2431884804 2452029721 2484989765 2328395143 2521863845 FALSE
fr1 Aug. 2002 (JGI 3.0/fr1) /gbdb/fr1/nib Fugu chrUn:148538552-148543911 1 6865 Fugu Takifugu rubripes /gbdb/fr1/html/description.html 0 0 JGI V3.0 31033 FALSE 2002 304246063 308382001 305810806 313233208 312725665 318947169 318218870 321254128 305678751 349519338 FALSE
fr2 Oct. 2004 (JGI 4.0/fr2) /gbdb/fr2 Fugu chrUn:29305920-29330760 1 6864 Fugu Takifugu rubripes /gbdb/fr2/html/description.html 0 0 JGI V4.0 31033 TRUE 2004 328447074 330934210 332664147 340907590 343410795 345715212 345136745 350886313 330208520 400525790 FALSE
fr3 Oct. 2011 (FUGU5/fr3) /gbdb/fr3 Fugu chr21:5807962-5832802 1 6863 Fugu Takifugu rubripes /gbdb/fr3/html/description.html 0 0 Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 31033 TRUE 2011 327997579 329756333 331709289 338795776 342024435 342753629 342427370 346840475 328987340 391484715 TRUE
gadMor1 May 2010 (Genofisk GadMor_May2010/gadMor1) /gbdb/gadMor1 Atlantic cod HE567617:3931-7549 1 1840 Atlantic cod Gadus morhua /gbdb/gadMor1/html/description.html 0 0 Genofisk GadMor_May2010 (GCA_000231765.1) 8049 TRUE 2010 529022970 547899357 558531623 550869580 562214805 552648515 546198449 533393725 536246225 824327835 FALSE
galGal2 Feb. 2004 (WUGSC 1.0/galGal2) /gbdb/galGal2/nib Chicken chr13:13120186-13124117 1 3317 Chicken Gallus gallus /gbdb/galGal2/html/description.html 0 0 Chicken Genome Sequencing Consortium Feb. 2004 release 9031 FALSE 2004 995085337 1012211039 1021433738 1032036363 1028863295 1034592602 1054942638 1059632597 989174531 1133629576 FALSE
galGal3 May 2006 (WUGSC 2.1/galGal3) /gbdb/galGal3 Chicken chr5:57710001-57780000 1 3316 Chicken Gallus gallus /gbdb/galGal3/html/description.html 0 0 Chicken Genome Sequencing Consortium May 2006 release 9031 TRUE 2006 987029959 1001994393 1013771201 1026474312 1019530731 1019940994 1043437780 1039178772 981288864 1100480441 FALSE
galGal4 Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) /gbdb/galGal4 Chicken chr1:51849854-51853553 1 3315 Chicken Gallus gallus /gbdb/galGal4/html/description.html 0 0 ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 9031 TRUE 2011 988706255 995306825 1003141816 1012194374 1009728017 1007805778 1021229073 1008860690 986094600 1046932099 TRUE
galGal5 Dec 2015 (Gallus_gallus-5.0/galGal5) /gbdb/galGal5 Chicken chr4:45985744-45991655 1 3314 Chicken Gallus gallus /gbdb/galGal5/html/description.html 0 0 ICGC Gallus_gallus-5.0 (GCA_000002315.3) 9031 TRUE 2015 1050325997 1072217067 1088799481 1110065074 1122257082 1119974224 1150388536 1144961410 1048701042 1230258557 TRUE
galGal6 Mar. 2018 (GRCg6a/galGal6) /gbdb/galGal6 Chicken chr4:45667317-45670831 1 3313 Chicken Gallus gallus /gbdb/galGal6/html/description.html 0 0 Genome Reference Consortium 9031 TRUE 2018 1009061282 1015662095 1022009057 1035428830 1030448168 1027195562 1059102355 1040315833 1000118107 1065365425 TRUE
galVar1 Jun. 2014 (G_variegatus-3.0.2/galVar1) /gbdb/galVar1 Malayan flying lemur NW_007732982v1:59339-77043 1 13060 Malayan flying lemur Galeopterus variegatus /gbdb/galVar1/html/description.html 0 0 Washington University (WashU) 482537 TRUE 2014 2446783677 2547716467 2604466798 2630430229 2678259989 2682984737 2648329229 2705842117 2489557585 3187660572 FALSE
gasAcu1 Feb. 2006 (Broad/gasAcu1) /gbdb/gasAcu1 Stickleback chrI:14092957-14102956 1 19820 Stickleback Gasterosteus aculeatus /gbdb/gasAcu1/html/description.html 0 0 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 69293 TRUE 2006 408163126 416067839 421874879 431580441 432890350 432931840 442578877 440272513 425897919 463354448 FALSE
geoFor1 Apr. 2012 (GeoFor_1.0/geoFor1) /gbdb/geoFor1 Medium ground finch JH739914:135428-435957 1 13365 Medium ground finch Geospiza fortis /gbdb/geoFor1/html/description.html 0 0 Beijing Genomics Institute 48883 TRUE 2012 1010587036 1020492475 1023185495 1036763451 1014590880 1030355303 1015310999 1021542911 1013490316 1065292181 FALSE
gorGor3 May 2011 (gorGor3.1/gorGor3) /gbdb/gorGor3 Gorilla chr1:114753601-114763600 1 7683 Gorilla Gorilla gorilla gorilla /gbdb/gorGor3/html/description.html 0 0 Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 9595 TRUE 2011 2428045340 2569524336 2646928590 2713037134 2678569010 2737432028 2747497426 2749946075 2529829795 3029553646 TRUE
gorGor4 Dec 2014 (gorGor4.1/gorGor4) /gbdb/gorGor4 Gorilla chr5:6996937-7026323 1 7682 Gorilla Gorilla gorilla gorilla /gbdb/gorGor4/html/description.html 0 0 Wellcome Trust Sanger Institute Dec 2014 (NCBI project 31265, GCA_000151905.1) 9595 TRUE 2014 2509151037 2661668758 2760349406 2797000882 2774472360 2799924495 2806334149 2835972681 2618061547 3063310485 TRUE
gorGor5 Mar. 2016 (GSMRT3/gorGor5) /gbdb/gorGor5 Gorilla CYUI01014949v1:16861488-16905480 1 7681 Gorilla Gorilla gorilla gorilla /gbdb/gorGor5/html/description.html 0 0 UNIVERSITY OF WASHINGTON 9595 TRUE 2016 2593328490 2750653445 2872542393 2946362570 2921207952 2991233804 3026256154 3050689981 2713069247 3080431298 TRUE
hetGla1 Jul. 2011 (BGI HetGla_1.0/hetGla1) /gbdb/hetGla1 Naked mole-rat JH169644:999,819-1,006,151 1 14015 Naked mole-rat Heterocephalus glaber /gbdb/hetGla1/html/description.html 0 0 HetGla_1.0 (NCBI project 68323, accession GCA_000230445.1 10181 TRUE 2011 2226976614 2326613459 2390528896 2371895684 2385411533 2367324393 2421766491 2418416827 2251235032 2643978223 FALSE
hetGla2 Jan. 2012 (Broad HetGla_female_1.0/hetGla2) /gbdb/hetGla2 Naked mole-rat JH602185:522994-528500 1 14014 Naked mole-rat Heterocephalus glaber /gbdb/hetGla2/html/description.html 0 0 Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 10181 TRUE 2012 2186356923 2291188742 2350718134 2352589212 2306600670 2286392046 2347253820 2319595422 2204946347 2618204639 FALSE
hg16 July 2003 (NCBI34/hg16) /gbdb/hg16/nib Human chr4:56214201-56291736 1 90 Human Homo sapiens /gbdb/hg16/html/description.html 1 0 NCBI Build 34 9606 FALSE 2003 2544494571 2677863355 2727431988 2768524609 2794340756 2819080196 2845035794 2847780885 2648487831 3098026081 FALSE
hg17 May 2004 (NCBI35/hg17) /gbdb/hg17/nib Human chr7:127471196-127495720 1 80 Human Homo sapiens /gbdb/hg17/html/description.html 1 0 NCBI Build 35 9606 FALSE 2004 NA NA NA NA NA NA NA NA NA 3095016460 TRUE
hg19 Feb. 2009 (GRCh37/hg19) /gbdb/hg19 Human chrX:15,578,261-15,621,068 1 60 Human Homo sapiens /gbdb/hg19/html/description.html 1 0 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 9606 TRUE 2009 2550301095 2687271065 2740145681 2781532906 2809561002 2833153372 2861605605 2857893341 2656222933 3137161264 TRUE
hg38 Dec. 2013 (GRCh38/hg38) /gbdb/hg38 Human chrX:15,560,138-15,602,945 1 50 Human Homo sapiens /gbdb/hg38/html/description.html 1 0 GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15) 9606 TRUE 2013 2564553930 2706186140 2758258906 2815435213 2846835159 2874271596 2910683893 2677388039 NA 3209286105 TRUE
latCha1 Aug. 2011 (Broad/latCha1) /gbdb/latCha1 Coelacanth JH126819:1630199-1640227 1 3610 Coelacanth Latimeria chalumnae /gbdb/latCha1/html/description.html 0 0 Broad LatCha1 (GCA_000225785.1) 7897 TRUE 2011 2004307491 2082378712 2160179681 2197051616 2174432697 2219673405 2231227240 2220159270 2071682955 2860591921 FALSE
loxAfr3 Jul. 2009 (Broad/loxAfr3) /gbdb/loxAfr3 Elephant scaffold_0:64882726-64892725 1 5518 Elephant Loxodonta africana /gbdb/loxAfr3/html/description.html 0 0 Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 9785 TRUE 2009 2711171966 2877047391 3048315093 3027548123 3082540269 3056032418 3120476550 3155799998 2870546860 3196760833 FALSE
macEug2 Sep. 2009 (TWGS Meug_1.1/macEug2) /gbdb/macEug2 Wallaby GL095587:25,998-40,635 1 23019 Wallaby Macropus eugenii /gbdb/macEug2/html/description.html 0 0 TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 9315 FALSE 2009 2405736126 2494352481 2514054052 2564205349 2553857102 2610132162 2545517319 2638531405 2471180132 3075184024 FALSE
macFas5 Jun. 2013 (Macaca_fascicularis_5.0/macFas5) /gbdb/macFas5 Crab-eating macaque chr3:43196222-43472778 1 3705 Crab-eating macaque Macaca fascicularis /gbdb/macFas5/html/description.html 0 0 Washington University (WashU) GCA_000364345.1 9541 TRUE 2013 2540795644 2643432730 2720309447 2766838985 2765736972 2779702403 2822120037 2782576779 2634614019 2946843737 FALSE
manPen1 Aug 2014 (M_pentadactyla-1.1.1/manPen1) /gbdb/manPen1 Chinese pangolin KN005617:527189-790783 1 3355 Chinese pangolin Manis pentadactyla /gbdb/manPen1/html/description.html 0 0 Washington University (WashU) GCA_000738955.1 143292 FALSE 2014 1889235806 1891364481 1950712687 1956468308 1961371890 1996270752 1990106882 1978642989 1920049330 2204741241 FALSE
melGal1 Dec. 2009 (TGC Turkey_2.01/melGal1) /gbdb/melGal1 Turkey chr5:57710001-57780000 1 20835 Turkey Meleagris gallopavo /gbdb/melGal1/html/description.html 0 0 TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 9103 TRUE 2009 922120228 934325698 941487089 946886889 931095266 949539211 946028443 948118026 924518853 1061817101 FALSE
melGal5 Nov. 2014 (Turkey_5.0/melGal5) /gbdb/melGal5 Turkey chr4:21251858-21288049 1 20834 Turkey Meleagris gallopavo /gbdb/melGal5/html/description.html 0 0 Turkey Genome Consortium 9103 TRUE 2014 1000691654 1006975569 1027204236 1039750767 1021912044 1031841579 1030857860 1047215546 1000935924 1128339136 FALSE
melUnd1 Sep. 2011 (WUSTL v6.3/melUnd1) /gbdb/melUnd1 Budgerigar JH556451:700038-706370 1 2905 Budgerigar Melopsittacus undulatus /gbdb/melUnd1/html/description.html 0 0 WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 13146 TRUE 2011 1045691286 1040293759 1074769286 1081830938 1082070641 1078752981 1078412141 1093794615 1058120183 1117373619 FALSE
micMur1 Jul. 2007 (Broad/micMur1) /gbdb/micMur1 Mouse lemur scaffold_31:985166-987669 1 13680 Mouse lemur Microcebus murinus /gbdb/micMur1/html/description.html 0 0 Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 30608 TRUE 2007 1671537967 1734899616 1754756513 1789275441 1811906383 1846940293 1848303870 1855447341 1710690187 2902270736 FALSE
micMur2 May 2015 (Mouse lemur/micMur2) /gbdb/micMur2 Mouse lemur KQ058561v1:1733963-1789196 1 13679 Mouse lemur Microcebus murinus /gbdb/micMur2/html/description.html 0 0 Broad Institute and Baylor College of Medicine Mmur_2.0 30608 TRUE 2015 2220211867 2294240758 2309170660 2323308509 2370332510 2376217313 2370265786 2364897300 2259578937 2438804424 FALSE
mm10 Dec. 2011 (GRCm38/mm10) /gbdb/mm10 Mouse chr12:56694976-56714605 1 270 Mouse Mus musculus /gbdb/mm10/html/description.html 1 0 Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 10090 TRUE 2011 2229593382 2308125299 2407883243 2467481008 2470611367 2494787038 2520868989 2538590322 2302017407 2730871774 TRUE
mm7 Aug. 2005 (NCBI35/mm7) /gbdb/mm7 Mouse chr12:47396009-47402736 1 289 Mouse Mus musculus /gbdb/mm7/html/description.html 1 0 NCBI Build 35 10090 FALSE 2005 2207425568 2286894479 2393368889 2432601839 2432697052 2458234533 2482774613 2487520303 2282809794 2847717329 FALSE
mm9 July 2007 (NCBI37/mm9) /gbdb/mm9 Mouse chr12:57795963-57815592 1 287 Mouse Mus musculus /gbdb/mm9/html/description.html 1 0 NCBI Build 37 10090 TRUE 2007 2225595513 2305131077 2404646149 2463437085 2462759001 2489384085 2513019076 2528988583 2299755199 2725765481 TRUE
monDom1 Oct. 2004 (Broad prelim/monDom1) /gbdb/monDom1 Opossum scaffold_18580:4449881-4565227 1 15625 Opossum Monodelphis domestica /gbdb/monDom1/html/description.html 0 0 Broad Inst. Prelim Oct04 13616 FALSE 2004 3067437493 3207764053 3416764768 3415514575 3450492461 3473309922 3471243818 3496607150 3177218494 3563247205 FALSE
musFur1 Apr. 2011 (MusPutFur1.0/musFur1) /gbdb/musFur1 Ferret GL896955:7361256-7370255 1 6315 Ferret Mustela putorius furo /gbdb/musFur1/html/description.html 0 0 Ferret Genome Sequencing Consortium 9669 TRUE 2011 2224330962 2228972279 2238593104 2283329598 2284135052 2292375212 2268754574 2312317017 2185711208 2410758013 FALSE
myoLuc2 Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) /gbdb/myoLuc2 Microbat GL429775:12,072,919-12,378,895 1 13464 Microbat Myotis lucifugus /gbdb/myoLuc2/html/description.html 0 0 Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 59463 TRUE 2010 1763489012 1829254228 1864451532 1932616765 1943619607 1953302322 1968668966 1961706006 1788346466 2034575300 FALSE
nanPar1 Mar. 2015 (BGI_ZX_2015/nanPar1) /gbdb/nanPar1 Tibetan frog KN907049v1:353180-356480 1 20312 Tibetan frog Nanorana parkeri /gbdb/nanPar1/html/description.html 0 0 ASM93562v1 125878 FALSE 2015 1714666317 1790265820 1864720465 1887681548 1916457961 1916923538 1934297985 1951645558 1801380199 2053849526 FALSE
nasLar1 Nov. 2014 (Charlie1.0/nasLar1) /gbdb/nasLar1 Proboscis monkey chrM:1,150-2,550 1 16785 Proboscis monkey Nasalis larvatus /gbdb/nasLar1/html/description.html 0 0 Proboscis Monkey Functional Genome Consortium 43780 FALSE 2014 2208646441 2289782870 2308168585 2295656604 2326446582 2324485068 2329860714 2324115309 2307236854 3011982740 FALSE
nomLeu1 Jan. 2010 (GGSC Nleu1.0/nomLeu1) /gbdb/nomLeu1 Gibbon GL397261:37115599-37125598 1 7415 Gibbon Nomascus leucogenys /gbdb/nomLeu1/html/description.html 0 0 GGSC (NCBI project 13975, accession GCA_000146795.1) 61853 TRUE 2010 2431433539 2536484514 2627362634 2666215927 2684107184 2700624267 2772441558 2781630032 2510006236 2936035333 FALSE
nomLeu2 Jun. 2011 (GGSC Nleu1.1/nomLeu2) /gbdb/nomLeu2 Gibbon GL397298:23130040-23137416 1 7414 Gibbon Nomascus leucogenys /gbdb/nomLeu2/html/description.html 0 0 Gibbon Genome Sequencing Consortium Nleu1.1 (NCBI project 13975, GCA_000146795.2, WGS ADFV01) 61853 FALSE 2011 2431433539 2536484514 2627362634 2666215927 2684107184 2700624267 2772441558 2781630032 2510006236 2936052603 FALSE
nomLeu3 Oct. 2012 (GGSC Nleu3.0/nomLeu3) /gbdb/nomLeu3 Gibbon chr21:52408339-52415715 1 7413 Gibbon Nomascus leucogenys /gbdb/nomLeu3/html/description.html 0 0 Gibbon Genome Sequencing Consortium 61853 TRUE 2012 2432968790 2535498512 2628989393 2667459566 2686070678 2692721388 2764207696 2792084110 2508883735 2962077449 FALSE
ochPri2 Jul. 2008 (Broad/ochPri2) /gbdb/ochPri2 Pika scaffold_6491:75719-81052 1 16325 Pika Ochotona princeps /gbdb/ochPri2/html/description.html 0 0 Broad Institute ochPri2 9978 TRUE 2008 1572409066 1625678358 1683663126 1751244469 1782710722 1799140943 1835846033 1872786388 1600173925 3445784354 FALSE
ochPri3 May 2012 (OchPri3.0/ochPri3) /gbdb/ochPri3 Pika JH802138:776400-918286 1 16324 Pika Ochotona princeps /gbdb/ochPri3/html/description.html 0 0 Broad Institute 9978 FALSE 2012 1904559230 1896347613 1940917408 1927608954 1968980927 1952915197 1935521524 1915147904 1882721705 2229835716 FALSE
oreNil2 Jan. 2011 (Broad oreNil1.1/oreNil2) /gbdb/oreNil2 Nile tilapia chrLG5:26068730-26095423 1 14419 Nile tilapia Oreochromis niloticus /gbdb/oreNil2/html/description.html 0 0 Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.2) 8128 TRUE 2011 754532141 778357758 794680900 804892811 806918618 808314917 813891773 816417556 771724634 927696114 FALSE
ornAna1 Mar. 2007 (WUGSC 5.0.1/ornAna1) /gbdb/ornAna1 Platypus chrX5:26250001-26320000 1 16410 Platypus Ornithorhynchus anatinus /gbdb/ornAna1/html/description.html 0 0 WUSTL version 5.0.1 9258 TRUE 2007 1559323512 1677138114 1714659829 1731909549 1758198117 1770785324 1773697339 1776674496 1629046172 1996811212 FALSE
ornAna2 Feb. 2007 (ASM227v2/ornAna2) /gbdb/ornAna2 Platypus chrX5:870777-1056769 1 16409 Platypus Ornithorhynchus anatinus /gbdb/ornAna2/html/description.html 0 0 WUGSC ASM227v2 9258 TRUE 2007 1559323512 1677138114 1714659829 1731909549 1758198117 1770785324 1773697339 1776674496 1629046172 1996826513 FALSE
oryCun2 Apr. 2009 (Broad/oryCun2) /gbdb/oryCun2 Rabbit chr9:11026346-11032288 1 18009 Rabbit Oryctolagus cuniculus /gbdb/oryCun2/html/description.html 0 0 Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 9986 TRUE 2009 2291474718 2426721880 2455596761 2567514875 2530231927 2603210972 2576291490 2662396039 2355481061 2737490501 FALSE
oryLat2 Oct. 2005 (NIG/UT MEDAKA1/oryLat2) /gbdb/oryLat2 Medaka chr18:14,435,198-14,444,829 1 13359 Medaka Oryzias latipes /gbdb/oryLat2/html/description.html 0 0 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 8090 TRUE 2005 639149030 645585535 669843373 688582054 693190548 698657510 705821645 711324617 652929148 869000216 FALSE
otoGar3 Mar. 2011 (Broad/otoGar3) /gbdb/otoGar3 Bushbaby GL873620:5980653-5987990 1 2940 Bushbaby Otolemur garnettii /gbdb/otoGar3/html/description.html 0 0 Broad Institute (GCA_000181295.3) 30611 TRUE 2011 2257055313 2323635830 2326903588 2360765619 2376232068 2395533341 2372527428 2390388070 2277869772 2519724550 FALSE
oviAri1 Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) /gbdb/oviAri1 Sheep chr19:53,315,047-53,326,013 1 19315 Sheep Ovis aries /gbdb/oviAri1/html/description.html 0 0 ISGC (NCBI project 10709, accession GCA_000005525.1) 9940 TRUE 2010 1210400524 1254107705 1310243483 1370545169 1426047080 1436453013 1529987302 1603654946 1237703824 2860512983 FALSE
oviAri3 Aug. 2012 (ISGC Oar_v3.1/oviAri3) /gbdb/oviAri3 Sheep chr19:50686000-50700183 1 19314 Sheep Ovis aries /gbdb/oviAri3/html/description.html 0 0 International Sheep Genome Consortium 9940 TRUE 2012 2220173822 2307223472 2428401343 2454408627 2479159031 2496130500 2537617667 2511058407 2301041707 2619054388 FALSE
oviAri4 Nov. 2015 (Oar_v4.0/oviAri4) /gbdb/oviAri4 Sheep chr11:41112382-41116848 1 19313 Sheep Ovis aries /gbdb/oviAri4/html/description.html 0 0 International Sheep Genome Consortium 9940 TRUE 2015 2251946976 2355880054 2479090744 2503077079 2525829798 2548223345 2581852138 2546984533 2351017045 2615516299 FALSE
panPan1 May 2012 (Max-Planck/panPan1) /gbdb/panPan1 Bonobo JH649943:63,405-124,886 1 2625 Bonobo Pan paniscus /gbdb/panPan1/html/description.html 0 0 Max-Planck Institute panpan1 (GCA_000258655.1) 9597 TRUE 2012 2497621397 2593241113 2704194248 2715345369 2748263655 2733465514 2734145383 2730563638 2574496612 2869190071 TRUE
panPan2 Aug. 2015 (MPI-EVA panpan1.1/panPan2) /gbdb/panPan2 Bonobo chr7:119267067-119359255 1 2624 Bonobo Pan paniscus /gbdb/panPan2/html/description.html 0 0 Max-Planck Institute for Evolutionary Anthropology 9597 FALSE 2015 2496632750 2595269547 2708768686 2716964759 2746842500 2736251686 2734921758 2730411003 2572859129 3286643896 TRUE
panTro1 Nov. 2003 (CGSC 1.1/panTro1) /gbdb/panTro1/nib Chimp chr6:115705331-115981791 1 3330 Chimp Pan troglodytes /gbdb/panTro1/html/description.html 0 0 CGSC Build 1 Version 1 Arachne assembly 9598 FALSE 2003 2457529528 2561516124 2681036141 2725399550 2734318855 2733596061 2724481214 2751482570 2535814248 4420375440 FALSE
panTro3 Oct. 2010 (CGSC 2.1.3/panTro3) /gbdb/panTro3 Chimp chr7:115900699-116162358 1 3328 Chimp Pan troglodytes /gbdb/panTro3/html/description.html 0 0 CGSC 2.1.3 (GCA_000001515.3) 9598 TRUE 2010 2531018016 2660670297 2797589488 2832180738 2869258112 2856727393 2861005038 2879542885 2634743657 3307960432 TRUE
panTro4 Feb. 2011 (CSAC 2.1.4/panTro4) /gbdb/panTro4 Chimp chr3:132959918-132967918 1 3327 Chimp Pan troglodytes /gbdb/panTro4/html/description.html 0 0 CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 9598 TRUE 2011 2530765604 2662183654 2798283587 2833287471 2869379773 2856164724 2860742988 2879195759 2634675271 3309577922 TRUE
panTro5 May 2016 (Pan_tro 3.0/panTro5) /gbdb/panTro5 Chimp chr7:118772635-119046356 1 3326 Chimp Pan troglodytes /gbdb/panTro5/html/description.html 0 0 Chimpanzee Sequencing and Analysis Consortium 9598 TRUE 2016 2642417776 2792339170 2951051811 2973320275 3012001966 2989913760 2950865363 3002680243 2746121570 3231170666 TRUE
panTro6 Jan. 2018 (Clint_PTRv2/panTro6) /gbdb/panTro6 Chimp chr7:111311998-111585728 1 3325 Chimp Pan troglodytes /gbdb/panTro6/html/description.html 0 0 University of Washington 9598 TRUE 2018 2563021081 2686629376 2847165666 2863127781 2910512259 2921691640 2884046111 2927175918 2657513896 3050398082 TRUE
papAnu2 Mar. 2012 (Baylor Panu_2.0/papAnu2) /gbdb/papAnu2 Baboon chr1:110,189,333-110,199,332 1 2050 Baboon Papio anubis /gbdb/papAnu2/html/description.html 0 0 Baylor College of Medicine 9555 TRUE 2012 2543061535 2643406437 2751414784 2824586720 2786500004 2839206740 2846464317 2884327494 2649648817 2948380710 TRUE
papAnu4 Apr. 2017 (Panu_3.0/papAnu4) /gbdb/papAnu4 Baboon chr1:106647222-106657040 1 2048 Baboon Papio anubis /gbdb/papAnu4/html/description.html 0 0 Human Genome Sequencing Center 9555 TRUE 2017 2583688430 2678236944 2782239179 2875423780 2833162760 2861368927 2886532584 2913907429 2691488698 2959373024 FALSE
papHam1 Nov. 2008 (Baylor Pham_1.0/papHam1) /gbdb/papHam1 Baboon scaffold4004:96950-104215 1 2051 Baboon Papio hamadryas /gbdb/papHam1/html/description.html 0 0 Baylor BCM HGSC Pham_1.0 9562 TRUE 2008 2511293722 2574448974 2649519102 2686702237 2653764161 2685654438 2674585640 2698331951 2588363495 2867564654 FALSE
petMar1 Mar. 2007 (WUGSC 3.0/petMar1) /gbdb/petMar1 Lamprey Contig11034:8429-10197 1 12020 Lamprey Petromyzon marinus /gbdb/petMar1/html/description.html 0 0 WUSTL v.3.0 (March 2007) 7757 FALSE 2007 641783451 683965499 734710777 765641923 786626878 797781676 815851404 830381503 666143017 1027258967 FALSE
petMar2 Sep. 2010 (WUGSC 7.0/petMar2) /gbdb/petMar2 Lamprey GL476334:480870-830419 1 12019 Lamprey Petromyzon marinus /gbdb/petMar2/html/description.html 0 0 GSC Washington University School of Medicine 7757 FALSE 2010 520994767 541058583 585721650 603643975 610183176 618860527 634923161 637611525 538295823 885550958 TRUE
petMar3 Dec. 2017 (Pmar_germline 1.0/petMar3) /gbdb/petMar3 Lamprey PIZI01000026v1:8,994,639-9,025,694 1 12018 Lamprey Petromyzon marinus /gbdb/petMar3/html/description.html 0 0 University of Kentucky 7757 FALSE 2017 818967512 881577686 933904576 953270953 953458269 981530108 965836298 989801994 855547726 1130433897 TRUE
ponAbe2 July 2007 (WUGSC 2.0.2/ponAbe2) /gbdb/ponAbe2 Orangutan chrX:152299762-152501081 1 15765 Orangutan Pongo pygmaeus abelii /gbdb/ponAbe2/html/description.html 0 0 WUSTL 3.0 9601 TRUE 2007 2626439765 2784933631 2936952972 2965573105 2973335489 3035517506 3068821284 3090961704 2748698434 3446771396 FALSE
ponAbe3 Jan. 2018 (Susie_PABv2/ponAbe3) /gbdb/ponAbe3 Orangutan chrX:43955314-44095683 1 15764 Orangutan Pongo pygmaeus abelii /gbdb/ponAbe3/html/description.html 0 0 University of Washington 9601 TRUE 2018 2592605081 2756987614 2881592891 2930088517 2909339384 2961544918 2955145695 2982129430 2710134598 3065052215 FALSE
priPac1 Feb. 2007 (WUGSC 5.0/priPac1) /gbdb/priPac1 P. pacificus chrUn:64713500-64721000 1 16015 P. pacificus Pristionchus pacificus /gbdb/priPac1/html/description.html 0 0 Washington University School of Medicine GSC Pristionchus pacificus 5.0 54126 FALSE 2007 130511753 133349315 137558853 141148920 144063980 141214489 145943885 146438867 133341126 174852139 FALSE
proCap1 Jul. 2008 (Broad/proCap1) /gbdb/proCap1 Rock hyrax scaffold_15515:19471-24894 1 18760 Rock hyrax Procavia capensis /gbdb/proCap1/html/description.html 0 0 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 9813 TRUE 2008 2148424378 2259928347 2321049126 2338437816 2358814839 2403185101 2400084998 2399832801 2241752633 2985258999 FALSE
pteVam1 Jul. 2008 (Broad/pteVam1) /gbdb/pteVam1 Megabat scaffold_8765:35746-39000 1 13370 Megabat Pteropus vampyrus /gbdb/pteVam1/html/description.html 0 0 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 132908 TRUE 2008 1709941250 1763522418 1789669909 1800783352 1807387467 1814628127 1833405453 1856198532 1749172920 1996076410 FALSE
rheMac10 Feb. 2019 (Mmul_10/rheMac10) /gbdb/rheMac10 Rhesus chr3:70672926-70708108 1 18410 Rhesus Macaca mulatta /gbdb/rheMac10/html/description.html 0 0 The Genome Institute at Washington University School of Medicine 9544 TRUE 2019 2583925190 2653677440 2745217109 2787948397 2835960902 2859311622 2825450586 2877310579 2664574967 2971331530 FALSE
rheMac2 Jan. 2006 (MGSC Merged 1.0/rheMac2) /gbdb/rheMac2 Rhesus chr7:58999504-59100350 1 18414 Rhesus Macaca mulatta /gbdb/rheMac2/html/description.html 0 0 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 9544 FALSE 2006 2445428314 2499178340 2598624693 2641821764 2637388590 2661433343 2675029854 2683641248 2501447207 2864106071 TRUE
rheMac3 Oct. 2010 (BGI CR_1.0/rheMac3) /gbdb/rheMac3 Rhesus chr14:70,034,487-70,048,046 1 18413 Rhesus Macaca mulatta /gbdb/rheMac3/html/description.html 0 0 Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 9544 TRUE 2010 2465496592 2551017403 2584765248 2644782000 2635511378 2666449838 2656594342 2667725476 2534780800 2969988180 TRUE
rheMac8 Nov. 2015 (BCM Mmul_8.0.1/rheMac8) /gbdb/rheMac8 Rhesus chr3:64242280-64278013 1 18411 Rhesus Macaca mulatta /gbdb/rheMac8/html/description.html 0 0 Baylor College of Medicine Genome Sequencing Center 9544 TRUE 2015 2604642912 2694504152 2829400873 2919626904 2933154523 2981878934 2983244323 3015715672 2702925163 3236224332 TRUE
rhiRox1 Oct. 2014 (Rrox_v1/rhiRox1) /gbdb/rhiRox1 Golden snub-nosed monkey KN296311v1:4,926,665-4,968,516 1 7673 Golden snub-nosed monkey Rhinopithecus roxellana /gbdb/rhiRox1/html/description.html 0 0 Novogene 61622 TRUE 2014 2533624433 2710781849 2782181636 2760310315 2758763304 2766237546 2804707098 2784783651 2665933923 2899552139 FALSE
rn4 Nov. 2004 (Baylor 3.4/rn4) /gbdb/rn4 Rat chr1:79,003,435-79,006,520 1 18033 Rat Rattus norvegicus /gbdb/rn4/html/description.html 1 0 Baylor HGSC v. 3.4 10116 FALSE 2004 2196739554 2278547064 2371368926 2427514240 2429200045 2424802253 2445415797 2492553649 2275025590 2834127293 TRUE
rn5 Mar. 2012 (RGSC 5.0/rn5) /gbdb/rn5 Rat chr1:81874031-81904651 1 18032 Rat Rattus norvegicus /gbdb/rn5/html/description.html 0 0 RGSC Rnor_5.0 (GCA_000001895.3) 10116 TRUE 2012 2231391113 2304458182 2367910464 2403827026 2404459534 2407632858 2411112765 2450372719 2293708540 2909698938 TRUE
rn6 Jul. 2014 (RGSC 6.0/rn6) /gbdb/rn6 Rat chr1:80608553-80639261 1 18031 Rat Rattus norvegicus /gbdb/rn6/html/description.html 0 0 RGSC Rnor_6.0 (GCA_000001895.4) 10116 TRUE 2014 2319146932 2406831204 2482781526 2524146883 2530421977 2533487328 2532941502 2584908307 2390155630 2870182909 TRUE
sacCer1 Oct. 2003 (SGD/sacCer1) /gbdb/sacCer1/nib S. cerevisiae chr13:746300-756100 1 19015 S. cerevisiae Saccharomyces cerevisiae /gbdb/sacCer1/html/description.html 1 0 SGD sequence data as of 1 Oct. 2003 4932 FALSE 2003 11375494 11629446 11692316 11778542 11615055 11813144 11818737 11765849 11670345 12156302 FALSE
sacCer2 June 2008 (SGD/sacCer2) /gbdb/sacCer2 S. cerevisiae chrIV:765959-775958 1 19014 S. cerevisiae Saccharomyces cerevisiae /gbdb/sacCer2/html/description.html 1 0 SGD June 2008 4932 TRUE 2008 11394034 11631451 11695721 11776946 11615023 11804154 11816227 11789151 11673480 12162995 TRUE
sacCer3 Apr. 2011 (SacCer_Apr2011/sacCer3) /gbdb/sacCer3 S. cerevisiae chrIV:765966-775965 1 19013 S. cerevisiae Saccharomyces cerevisiae /gbdb/sacCer3/html/description.html 1 0 Saccharomyces cerevisiae S288c assembly from Saccharomyces Genome Database (GCA_000146045.2) 559292 TRUE 2011 11380187 11624332 11693438 11777680 11607172 11783749 11825681 11763390 11672192 12157105 TRUE
saiBol1 Oct. 2011 (Broad/saiBol1) /gbdb/saiBol1 Squirrel monkey JH378122:1872708-1880068 1 19725 Squirrel monkey Saimiri boliviensis /gbdb/saiBol1/html/description.html 0 0 Broad SaiBol1.0 (GCA_000235385.1) 39432 TRUE 2011 2317161579 2404183581 2451084463 2484230858 2470141228 2511788228 2489280973 2499872779 2404816826 2608572064 FALSE
sarHar1 Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) /gbdb/sarHar1 Tasmanian devil chr4_GL856884_random:746,443-749,687 1 20085 Tasmanian devil Sarcophilus harrisii /gbdb/sarHar1/html/description.html 0 0 Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 9305 TRUE 2011 2796446405 2872173032 2885756334 2930768561 2920136607 2923702841 2909336213 2918131855 2818011073 3174693010 FALSE
sorAra1 June 2006 (Broad/sorAra1) /gbdb/sorAra1 Shrew scaffold_163319:6756-14632 1 19330 Shrew Sorex araneus /gbdb/sorAra1/html/description.html 0 0 Broad Institute sorAra1 (Draft_v2) 42254 TRUE 2006 1588116618 1665527731 1710362008 1738934197 1778762983 1822984931 1757515411 1830188580 1660013107 2936119008 FALSE
sorAra2 Aug. 2008 (Broad/sorAra2) /gbdb/sorAra2 Shrew JH798167:2116583-2689712 1 19329 Shrew Sorex araneus /gbdb/sorAra2/html/description.html 0 0 Broad Institute SorAra2.0 42254 TRUE 2008 2027367168 2082983519 2178824784 2196734899 2184138641 2220157901 2185152343 2231119347 2092688868 2423158183 FALSE
speTri2 Nov. 2011 (Broad/speTri2) /gbdb/speTri2 Squirrel JH393412:896020-902549 1 19714 Squirrel Spermophilus tridecemlineatus /gbdb/speTri2/html/description.html 0 0 Broad Institute (GCA_000236235.1) 43179 TRUE 2011 2203485496 2278869691 2305545675 2309083117 2308579457 2318801757 2302431943 2339341657 2256578884 2478393770 FALSE
strPur1 Apr. 2005 (Baylor 1.1/strPur1) /gbdb/strPur1 S. purpuratus Scaffold1 1 19040 S. purpuratus Strongylocentrotus purpuratus /gbdb/strPur1/html/description.html 0 0 Baylor 7668 FALSE 2005 653677483 684233104 735807897 746066017 756490430 773159878 771452852 769852356 685362862 1096072416 FALSE
strPur2 Sep. 2006 (Baylor 2.1/strPur2) /gbdb/strPur2 S. purpuratus Scaffold1 1 19039 S. purpuratus Strongylocentrotus purpuratus /gbdb/strPur2/html/description.html 0 0 Baylor release 3 Spur 2.1 7668 TRUE 2006 629119661 657491431 714561307 714314421 723792664 747701608 751734196 745139758 664789414 907085737 FALSE
susScr11 Feb. 2017 (Sscrofa11.1/susScr11) /gbdb/susScr11 Pig chr18:19836295-19840119 1 16312 Pig Sus scrofa /gbdb/susScr11/html/description.html 0 0 The Swine Genome Sequencing Consortium (SGSC) 9823 TRUE 2017 2251975994 2359453421 2399118907 2423467179 2469088872 2455392186 2460785927 2437550871 2298417481 2501912388 TRUE
susScr2 Nov. 2009 (SGSC Sscrofa9.2/susScr2) /gbdb/susScr2 Pig chr13:57394416-57400490 1 16314 Pig Sus scrofa /gbdb/susScr2/html/description.html 0 0 SGSC Sscrofa9.2 (NCBI project 10718, GCA_000003025.2) 9823 TRUE 2009 1850120004 1931583072 1982895223 2007599470 2058146960 2043880242 2047115344 2047894682 1905103424 2262501571 FALSE
susScr3 Aug. 2011 (SGSC Sscrofa10.2/susScr3) /gbdb/susScr3 Pig chr18:20905375-20909537 1 16313 Pig Sus scrofa /gbdb/susScr3/html/description.html 0 0 SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 9823 TRUE 2011 2070836398 2187994665 2225991406 2250184395 2313499881 2302454690 2323697814 2308595246 2134091166 2808525991 TRUE
taeGut1 Jul. 2008 (WUGSC 3.2.4/taeGut1) /gbdb/taeGut1 Zebra finch chrZ:56,293,325-56,333,199 1 26160 Zebra finch Taeniopygia guttata /gbdb/taeGut1/html/description.html 0 0 Washington University taeGut1 59729 TRUE 2008 1082827127 1092832772 1151148718 1166374225 1196697695 1203403883 1230331999 1221854064 1093306669 1233186341 FALSE
taeGut2 Feb. 2013 (WashU taeGut324/taeGut2) /gbdb/taeGut2 Zebra finch chrZ:56283356-56343168 1 26159 Zebra finch Taeniopygia guttata /gbdb/taeGut2/html/description.html 0 0 Washington University School of Medicine 59729 TRUE 2013 1081302374 1090587244 1147281256 1162176049 1190798824 1197386133 1222540069 1211134270 1091519138 1232135591 TRUE
tarSyr1 Aug. 2008 (Broad/tarSyr1) /gbdb/tarSyr1 Tarsier scaffold_66368:1-3044 1 20080 Tarsier Tarsius syrichta /gbdb/tarSyr1/html/description.html 0 0 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 9478 TRUE 2008 2167811273 2287634951 2412342350 2440811589 2471659093 2456959667 2588347570 2541565433 2260597935 3179905132 FALSE
tarSyr2 Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) /gbdb/tarSyr2 Tarsier KE942683v1:148505-160236 1 20079 Tarsier Tarsius syrichta /gbdb/tarSyr2/html/description.html 0 0 Washington University 9478 TRUE 2013 2831523061 3034380185 3172618170 3196320981 3228708730 3176599892 3256493714 3227919598 2926503964 3453864774 FALSE
tetNig1 Feb. 2004 (Genoscope 7/tetNig1) /gbdb/tetNig1/nib Tetraodon chr10:2344000-2351500 1 20185 Tetraodon Tetraodon nigroviridis /gbdb/tetNig1/html/description.html 0 0 Genoscope and Broad Institute V7 (NCBI project 12350, CAAE01000000) 99883 FALSE 2004 284280428 289963988 298770894 300221697 306190831 311202194 313169619 308718393 287118618 402240326 FALSE
tetNig2 Mar. 2007 (Genoscope 8.0/tetNig2) /gbdb/tetNig2 Tetraodon chr10:2797091-2804214 1 20184 Tetraodon Tetraodon nigroviridis /gbdb/tetNig2/html/description.html 0 0 Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 99883 TRUE 2007 279175395 284977227 291072833 293573199 298630528 302936468 303079011 297862502 282503272 358618246 TRUE
thaSir1 Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) /gbdb/thaSir1 Garter snake NW_013657986v1:596051-618240 1 7000 Garter snake Thamnophis sirtalis /gbdb/thaSir1/html/description.html 0 0 The Genome Institute at Washington University School of Medicine (WUGSC) 35019 TRUE 2015 1034186387 1087192819 1097477027 1135165590 1130313422 1130967388 1131046294 1123289926 1070038405 1424897867 FALSE
triMan1 Oct. 2011 (Broad v1.0/triMan1) /gbdb/triMan1 Manatee JH594607:13029229-13038048 1 13075 Manatee Trichechus manatus latirostris /gbdb/triMan1/html/description.html 0 0 Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 127582 TRUE 2011 2454704360 2653541349 2754266455 2745398282 2810242366 2790373154 2790424120 2834642563 2587252049 3103808406 FALSE
tupBel1 Dec. 2006 (Broad/tupBel1) /gbdb/tupBel1 Tree shrew scaffold_149294.1-299378:275786-282564 1 20715 Tree shrew Tupaia belangeri /gbdb/tupBel1/html/description.html 0 0 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 37347 TRUE 2006 1899556055 1965229121 2036693007 2077327385 2087803390 2132911942 2130041061 2150135387 1951390535 3660774957 FALSE
turTru2 Oct. 2011 (Baylor Ttru_1.4/turTru2) /gbdb/turTru2 Dolphin JH481929:22304-29703 1 4674 Dolphin Tursiops truncatus /gbdb/turTru2/html/description.html 0 0 Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 9739 FALSE 2011 2111954030 2219454414 2262044165 2285959978 2306500455 2301453142 2293129920 2301603218 2161938896 2551996573 FALSE
vicPac1 Jul. 2008 (Broad/vicPac1) /gbdb/vicPac1 Alpaca scaffold_5479:34441-51753 1 1351 Alpaca Vicugna pacos /gbdb/vicPac1/html/description.html 0 0 Broad Institute vicPac1 30538 TRUE 2008 1611001133 1651518517 1694797553 1720273984 1767657799 1752689361 1792642976 1819529806 1652101200 2962253608 FALSE
vicPac2 Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) /gbdb/vicPac2 Alpaca KB632466:7430155-7447383 1 1350 Alpaca Vicugna pacos /gbdb/vicPac2/html/description.html 0 0 Broad Institute 30538 TRUE 2013 1990331348 2036385940 2035180053 2068128332 2032126571 2026411074 2056164289 2031928682 2026360387 2172177994 FALSE
wuhCor1 Jan. 2020/NC_045512.2 /gbdb/wuhCor1 SARS-CoV-2 NC_045512v2:1-29903 1 22324 SARS-CoV-2 SARS-CoV-2 /gbdb/wuhCor1/html/description.html 0 1 SARS-CoV-2 2697049 FALSE 2020 29717 30013 30012 29191 29668 29736 30013 29781 30008 29903 FALSE
xenLae2 Aug. 2016 (Xenopus_laevis_v2/xenLae2) /gbdb/xenLae2 African clawed frog chr9_10L:104687822-104704936 1 1225 African clawed frog Xenopus laevis /gbdb/xenLae2/html/description.html 0 0 International Xenopus Sequencing Consortium 8355 TRUE 2016 2078985670 2224687744 2325017132 2340036892 2383690240 2396927657 2416569382 2409515485 2200389205 2718433805 FALSE
xenTro1 Oct. 2004 (JGI 3.0/xenTro1) /gbdb/xenTro1 X. tropicalis scaffold_12:3462738-3490440 1 24040 X. tropicalis Xenopus tropicalis /gbdb/xenTro1/html/description.html 0 0 JGI v3.0 8364 FALSE 2004 1083700421 1143383118 1204660768 1258421190 1257333286 1267441146 1335258243 1338345938 1140019816 1630713514 FALSE
xenTro2 Aug. 2005 (JGI 4.1/xenTro2) /gbdb/xenTro2 X. tropicalis scaffold_27:565,941-578,374 1 24039 X. tropicalis Xenopus tropicalis /gbdb/xenTro2/html/description.html 0 0 JGI v4.1 8364 FALSE 2005 1079733578 1137453808 1198977339 1250569390 1245469786 1255630160 1317276654 1326573118 1135900832 1513925492 TRUE
xenTro3 Nov. 2009 (JGI 4.2/xenTro3) /gbdb/xenTro3 X. tropicalis GL172663:565941-578374 1 24038 X. tropicalis Xenopus tropicalis /gbdb/xenTro3/html/description.html 0 0 US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) 8364 TRUE 2009 1078501769 1136575021 1197763292 1249184295 1244815886 1254746674 1316083257 1325429885 1134586754 1511735326 TRUE
xenTro7 Sep. 2012 (JGI 7.0/xenTro7) /gbdb/xenTro7 X. tropicalis KB021661:77920643-77933995 1 24037 X. tropicalis Xenopus tropicalis /gbdb/xenTro7/html/description.html 0 0 US DOE Joint Genome Institute (JGI-PGF) 8364 TRUE 2012 1101740539 1150551930 1211786928 1258355110 1269937890 1285480325 1325351122 1318702951 1152010576 1437530879 TRUE
xenTro9 Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) /gbdb/xenTro9 X. tropicalis chr9:15945953-15959305 1 24036 X. tropicalis Xenopus tropicalis /gbdb/xenTro9/html/description.html 0 0 DOE Joint Genome Institute 8364 TRUE 2016 1102271481 1150810454 1215482077 1258487354 1273499084 1284917412 1325869926 1325152789 1152991965 1440398454 TRUE
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