misshie

#!/usr/bin/env ruby
class Percentile
  ROUND_DIGIT = 1
  
  def pctile(data0)
    return [] if data0.empty?
    data = data0.map{|x|Integer(x.round(ROUND_DIGIT) * (10 ** ROUND_DIGIT))}
    sorted_data = data.sort
    index_sum = Hash.new(0)
    count = Hash.new(0)

misshie

##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description=".">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description=".">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description=".">
##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description=".">
##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description=".">
##INFO=<ID=TOMMO_POSSIBLE_PLATFORM_BIAS_SITE,Number=0,Type=Flag,Description=".">
##INFO=<ID=CLNREVSTAT,Number=A,Type=String,Description=".">
##INFO=<ID=CLNSIGCONF,Number=A,Type=String,Description=".">
##INFO=<ID=CLNDISDBINCL,Number=A,Type=String,Description=".">
##INFO=<ID=CLNSIGINCL,Number=A,Type=String,Description=".">

misshie

require 'statistics2'

def chisq_test(a, b, c, d)
  total = a + b + c + d
  row1_total = a + b
  row2_total = c + d
  col1_total = a + c
  col2_total = b + d
  e_a = (row1_total * col1_total).to_f / total
  e_b = (row1_total * col2_total).to_f / total

misshie

#!/usr/bin/env ruby
require 'optparse'
require 'fileutils'
require 'rubyXL'
require 'rubyXL/convenience_methods/cell'
require 'rubyXL/convenience_methods/color'
require 'rubyXL/convenience_methods/font'
require 'rubyXL/convenience_methods/workbook'
require 'rubyXL/convenience_methods/worksheet'

misshie

#!/usr/bin/env ruby
# $ ./klass.rb --hoge=fuga --hoge=puyo --foo=bar
# {:h=>false, :hoge=>["fuga", "puyo"] :foo=>["bar"]}

require 'optparse'

class Klass
  attr_reader :opts
  
  def initialize(opts)

misshie

#!/usr/bin/env ruby
#
# Blink all locate LEDs of an SAS-enclosure binded to a block device
# Hiroyuki Mishima (missy@be.to)
#

require 'optparse'

class BlinkEnclosure
  PARALLEL = "parallel -j1"

misshie

Sub PhysPosGrouping()
    Dim oRange As Range
    Dim lRorB As Long
    Dim lColR As Long
    Dim gcount As Long
    
    Set oRange = ActiveSheet.UsedRange
    lRowB = oRange.Row + oRange.Rows.Count - 1
    lColR = oRange.Column + oRange.Columns.Count - 1
    

misshie

#!/bin/bash
sel=$(byobu ls | peco | cut -d ":" -f 1)
if [ ! -z "${sel}" ] ; then
  byobu a -t ${sel}
fi

misshie

#!/usr/bin/env ruby
# License: the MIT lincense.
# Copyright: MISHIMA, Hiroyuki hmishima at nagasaki-u.ac.jp, 2015

require 'rexml/document'

class Qstat2
  JOBNAME_WIDTH = 65

  def initialize

misshie

iupac = {
  "A" => ["A"], # Adenine
  "C" => ["C"], # Cytosine
  "G" => ["G"], # Guanine
  "T" => ["T"], # Thymine
  "R" => ["A", "G"], # puRine
  "Y" => ["C", "T"], # pYrimidine
  "S" => ["G", "C"], # Strong
  "W" => ["A", "T"], # Weak
  "K" => ["G", "T"], # Keto