Created
May 31, 2013 12:16
-
-
Save mjg17/5684600 to your computer and use it in GitHub Desktop.
EnsEMBL perl API:
Examine sequences for gene FTO
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
use strict; | |
use warnings; | |
use 5.016; | |
use Bio::Seq; | |
use Bio::SeqIO; | |
use Bio::EnsEMBL::Registry; | |
my $registry = 'Bio::EnsEMBL::Registry'; | |
$registry->load_registry_from_db( | |
-host => 'ensembldb.ensembl.org', | |
-user => 'anonymous' | |
); | |
my $gene_adaptor = $registry->get_adaptor( 'Human', 'Core', 'Gene' ); | |
my $gsi = 'ENSG00000140718'; | |
my $gene = $gene_adaptor->fetch_by_stable_id($gsi); | |
my $transcript = $gene->canonical_transcript; | |
my $tsi = $transcript->stable_id; | |
my $tname = $transcript->external_name; | |
say '------------------------------------------------------------------------'; | |
say "Canonical transcript for $gsi is $tsi ($tname)"; | |
my $tseq = $transcript->seq; | |
my $seqout = Bio::SeqIO->new( -format => 'Fasta' ); | |
say '------------------------------------------------------------------------'; | |
$seqout->write_seq($tseq); | |
my $translation = $transcript->translation; | |
my $psi = $translation->stable_id; | |
say '------------------------------------------------------------------------'; | |
say "Peptide for $tsi is $psi"; | |
say '------------------------------------------------------------------------'; | |
my $pep = Bio::Seq->new( -seq => $translation->seq, | |
-display_id => $psi ); | |
$seqout->write_seq($pep); | |
my $db_entries = $transcript->get_all_DBLinks; | |
my $n_entries = scalar @{$db_entries}; | |
say '------------------------------------------------------------------------'; | |
say "Found $n_entries DB links."; | |
# ...do some clever data mining here... | |
exit; |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
------------------------------------------------------------------------ | |
Canonical transcript for ENSG00000140718 is ENST00000471389 (FTO-001) | |
------------------------------------------------------------------------ | |
>ENST00000471389 | |
CTACGCTCTTCCAGCTGTCGGACCTGGGAAATTCTCCTGTGCTAAATCCCGTGGCGCTCG | |
CGGGTGTCGCCGCGGTGCATCCTGGGAGTTGTAGTTTTTTCTACTCAGAGGGAGAATAGC | |
TCCAGACGGGAGCAGGACGCTGAGAGAACTACATGCAGGAGGCGGGGTCCAGGGCGAGGG | |
ATCTACGCAGCTTGCGGTGGCGAAGGCGGCTTTAGTGGCAGCATGAAGCGCACCCCGACT | |
GCCGAGGAACGAGAGCGCGAAGCTAAGAAACTGAGGCTTCTTGAAGAGCTTGAAGACACT | |
TGGCTCCCTTATCTGACCCCCAAAGATGATGAATTCTATCAGCAGTGGCAGCTGAAATAT | |
CCTAAACTAATTCTCCGAGAAGCCAGCAGTGTATCTGAGGAGCTCCATAAAGAGGTTCAA | |
GAAGCCTTTCTCACACTGCACAAGCATGGCTGCTTATTTCGGGACCTGGTTAGGATCCAA | |
GGCAAAGATCTGCTCACTCCGGTATCTCGCATCCTCATTGGTAATCCAGGCTGCACCTAC | |
AAGTACCTGAACACCAGGCTCTTTACGGTCCCCTGGCCAGTGAAAGGGTCTAATATAAAA | |
CACACCGAGGCTGAAATAGCCGCTGCTTGTGAGACCTTCCTCAAGCTCAATGACTACCTG | |
CAGATAGAAACCATCCAGGCTTTGGAAGAACTTGCTGCCAAAGAGAAGGCTAATGAGGAT | |
GCTGTGCCATTGTGTATGTCTGCAGATTTCCCCAGGGTTGGGATGGGTTCATCCTACAAC | |
GGACAAGATGAAGTGGACATTAAGAGCAGAGCAGCATACAACGTAACTTTGCTGAATTTC | |
ATGGATCCTCAGAAAATGCCATACCTGAAAGAGGAACCTTATTTTGGCATGGGGAAAATG | |
GCAGTGAGCTGGCATCATGATGAAAATCTGGTGGACAGGTCAGCGGTGGCAGTGTACAGT | |
TATAGCTGTGAAGGCCCTGAAGAGGAAAGTGAGGATGACTCTCATCTCGAAGGCAGGGAT | |
CCTGATATTTGGCATGTTGGTTTTAAGATCTCATGGGACATAGAGACACCTGGTTTGGCG | |
ATACCCCTTCACCAAGGAGACTGCTATTTCATGCTTGATGATCTCAATGCCACCCACCAA | |
CACTGTGTTTTGGCCGGTTCACAACCTCGGTTTAGTTCCACCCACCGAGTGGCAGAGTGC | |
TCAACAGGAACCTTGGATTATATTTTACAACGCTGTCAGTTGGCTCTGCAGAATGTCTGT | |
GACGATGTGGACAATGATGATGTCTCTTTGAAATCCTTTGAGCCTGCAGTTTTGAAACAA | |
GGAGAAGAAATTCATAATGAGGTCGAGTTTGAGTGGCTGAGGCAGTTTTGGTTTCAAGGC | |
AATCGATACAGAAAGTGCACTGACTGGTGGTGTCAACCCATGGCTCAACTGGAAGCACTG | |
TGGAAGAAGATGGAGGGTGTGACAAATGCTGTGCTTCATGAAGTTAAAAGAGAGGGGCTC | |
CCCGTGGAACAAAGGAATGAAATCTTGACTGCCATCCTTGCCTCGCTCACTGCACGCCAG | |
AACCTGAGGAGAGAATGGCATGCCAGGTGCCAGTCACGAATTGCCCGAACATTACCTGCT | |
GATCAGAAGCCAGAATGTCGGCCATACTGGGAAAAGGATGATGCTTCGATGCCTCTGCCG | |
TTTGACCTCACAGACATCGTTTCAGAACTCAGAGGTCAGCTTCTGGAAGCAAAACCCTAG | |
AAGGAGCACAAGTCTCAGGCGGAGGAGAAAAAGAGATCGGCTTTTCTCCTCCAACGTTGT | |
CATGGGCTTAAGCAAGAGCAGTGGAGACTTCTCTTGGCCCCTAGATTGTAGCACCCGGGT | |
CCCAATCCAAAACAGCTAGGAAATGGTGCCCATGAAGTTTTAAATGTTTTAAAATGACCC | |
TGTGTTATAGTCTGATTTGGTGTTAAACAGGACCTTCTTCCCCCAAAATTGTTCAGATTA | |
TAAAATGTGAGCCATTCAGCCCCCAAGGTCCAGGGCAGGCGACAGGAACGAGCCCAGCGT | |
GTGACAAAGCCTAACCTACTTTCCTCTTTCCCAAGCTTTTTCAGAGACTCTGGAGTGGAC | |
CCAGCCCTCTGGGGAAAGACAGAACTTAGAGACATCCCAGTTACTCACCACACCCATAGT | |
GCTGTCCAATATGGTAGCCACTAGCTAGCTGTGGCTACTTCAATTTAAATTCAGTTTTAA | |
TTTTAATTAAAAATGCAGCTCTTCAGTCGCCCTGGCCACATTTCAAGTGCTTAACAGCCT | |
CATGTGGCTAGTGACTGCTGTATTGGACGGTACAGATATGGAACATTTTCATCATCGAAG | |
AAAGTCCTATTGGACAACACTTCTATAAAAAGTTTGAGAGCAGGAATTCTCATTTCCATT | |
CGTCTGTAGCTTCTATCCCCAAAGGCAAAGAAACTAAAAGAGAAATGACTCATTGAAGAT | |
TGGCCTCTTTCCTTTCTCTAAGACAAACCTAAGTAAAAGCCTGAGCTTTGAGTCCTATGC | |
TCAGCACACGGGAAGGAGATGTTAATAATTAAAATAAAGTTGATATCCTGTCTTTAGGGA | |
GTTCCCTTGATCTCTTGAAAGAGACACAGCCCCATTTACATTATTTCGTGGATTTCACCA | |
GCATAGTATAGTTTTTTTCTGTAAGTCCCTCATTCTTATGTAATAACAGGTGGAACTGAG | |
GTTTGAAGAACCTCAGTGGCCCATCCTGATGACATTGGAGACTCAAAGAGACAAGAGAGA | |
GTAGGGTTTAAAACCTGAGCTTTAAGACTCCCACTAGCTTCGTGTCCTTTGGCATGTTAA | |
CGTGCCTCAGTTTCCTCATCTGTATAATGGGGATATATGAAAGGCACCAGTCCTAAGGTG | |
AACATTAAGTGAGATGATTCTAGTTACAGACTTAGAACAATTTCCAGCACATAGTTAAAT | |
ATCCAGGAAATTCTGGTACTGTTATGTGTGGGTGAGCTGACCTGGATGTAGATGTTTTCC | |
TCTCTCTTGCTGACCCCTCCGCCAGTTTTGTCTTGTGATGCCATTAACACATCTCTCCCT | |
TTCTGACCTGGCTCCTGCCCATTGGTGTCCCAAGAAATCGTGAGAATAGTTAGCCCCCCG | |
TCTCCCCAGCCTGTTGCTTTCTCGTGTAGTTGTTCACAGTAGTTGAGAAGTTGAAGAGCT | |
TTTGCCTATTGAAGGTGCACTGAGAATAAACTCTTTCCTGCCACCAGAATTGCAGTGGTT | |
CACGGCCTGCACTCATTCCCATGAATGCAGTTAATAGCCACAGAAATGTCACATTAAGCA | |
AAGCAGCCAGGGTCTCATCGTGTTGAGACTCGAGTCTCTCAGACCTTGGATTCATTCCCT | |
GGTGTCTTTGAGCCTCAGTTTCCTCATTGGTAAAAGAGAAGTGAAGCAGTGTCTCACAGG | |
GTCATTACAGAGATTAAATGAAATAAATGAAATAACATAGACCAGGAGGGCGTGGTGTTT | |
AAAAGTCACAGATGGGGCACCCTCGGGCCATCCAGCCCAGTGTTTTCTTTAGCCCCTATG | |
ATGTTCATTTTTTGTTATATCCCATTAGGTGCCCATATTTAAAAATTGGGAGATTTCACA | |
TAAAATTAAAAGGTCTGCATTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTGAGACACAG | |
TCTCACTCTGTCACCAGGCTAGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCTGC | |
CTCCCAGGTTCAAGTAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACG | |
TGCCACCACGCCCAGCTAATTTTTGTATTTTTAGCAGAGATGGGGTTTCACCACATTGGC | |
CAGGATGGTCTCGATCTCAACCTCGTGATCCACCCACCTCGGTCTCCCAAAGCGCTGGGA | |
TTACAGGCGTGAGCCACCGCGCCAAGCCAAGGTCTGCATTTTTCTTTAGAACTCAGAACA | |
CCCAATAGTCCTAGGCCCCCATCCTCGCATGGCAGCAAGCTAAATAAGCATCTTCCCACT | |
GCGAGTTGGGGCATGACCCAGCCTATGGTTTGCCATACTCCCTCTTTTTCTCCGTTTTTT | |
CATTAATTGTGAACCTGACCTGCATCACCCTTTCATGTCAGTGCTCTCCAAACCTGCTTG | |
CTTGCACCCCTCTAGTCGAAATATTTTGTGCTTACCCCAATATATGTGTGTGACTATTGA | |
ACTCTATTCGTAGACTGCTTGTACTAATGTCATTTGCATCATAAAATATTCATATCCAAT | |
AAACATATTAAAAGGATGAGATAAGAAACCGAGAGATTTTGCTGTTTTTTTCCTTTTGCA | |
TGGATGAGCCAGCTTCACTGTCCTGGGTGGGGCCCAGGTGGAATTAGTTCTCAAAGTCCT | |
CCAGGTGGAGTCAGGGAATGTGCAACAGGGTTGGAGAAATCACTACTTTAAGTGAATCCG | |
AAAGGTGAGATCACATTTGCTCTAAAGAAATGGTGATCCCAGCACTTTGGGAGGCTGAGG | |
CAGCAGATCACTGGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACGGTGAAACCCCGT | |
CTCTACTGAAAACACAAAAATTAGCTGGGTGTGGTGGTGTGTGCCTGTAATCCCAGCTAC | |
TCGGGAGGCTGAGGCAGGCAAATCGCTTGGCCCGGGAGGCGGAGGTTGCAGTGAGCCGAG | |
ATCATGCCACTGCACTCCAGCCTGGGCCACGGAGCGAGAGAAGAAAGAAATGGTGACTTT | |
CATTGATCATGTGTTTGAGGATTTCATGTGCTCTCCAGGGAGGTTTCAGGTGGGTAGAAG | |
GAGGTGGGCAAGACCCAATAAAAAAGCAGCTGGTGCGGGCAATGACAATGAACTCGTATC | |
CTGCAGGGTCAAAGGAAGGCTTGCTTCTGCTGTGAATTGGAGAAGGACTTTCCTGGAAGC | |
ACAGGCCCAGAAATCGCACCCTTCTCCCCATGTGTGCGGATAAGGGACCACTTCCATCAG | |
CAGCAGCCCCCTCCTGCTTTCCTGCCAGTCCTCCCTGTGGTCCCAGGTCTCTTGAGAAAA | |
GTGATCTAAGAGATCCCTTTGCAATGAGGTGCTACTGACTGCCCTACCTCCCTCCCTTCC | |
TCCCATGAATGTTTCTTGGTGCTGACCACAGCCTCAGCAATGAGGCAAGCCTGGGGACCC | |
AAGACAGATCTCTGCCTCCCAGGCTAGTGGATGCCCTGGGATATGTAGTCACCAAAATAG | |
GAACTTACCCCATAGTGGGGAAATAGACAGTAAGCAGCAAATCAATAACAAGAGTGTTCC | |
AGATGGTTGTAAGTGCCAGGAAGGGAACCAACTGGGAGAGGGACAAGAGGAGATGGTGAC | |
TGACCAAGGGGACCTTGATCAGGCTGTGGGGAAGGGAGGTGGTTGGGAAGAGCTTCCCAG | |
GAAAGGGGACGGCGGGCCCAGGCAGGAGAGCCTTGGGAGGGGGTGCCCAAGGAAGGAAAA | |
GGGCCCTGAGCCTGAAGCCGAGAAGACCAGGAGGGGAGAAGGGGAGATGTAGGGCAGAGC | |
AGACGGGAGCCGCTCGGGTTTTATTCCACACACCCCAGGAAGCATGAGAGGGTTTCAAGC | |
AGCAAGGGCATGGAAGTAACTTGGTGAGATATTTTTATGCATTAGATCATCGCTCTATCT | |
GGATTCCAGAGGGTCTCTGAGAGAGCAAACAGCTTAATCCAAAGGAGCGGCTTTCCAACT | |
GGGAATGTCCCCCTGGCTGGGTGAGATCTCAAGATGGCCTGCGGCCCCTCTAGATTGCCT | |
GCCTACAGAGTTCACTCTAAACAGCCCCTCCCCTCCACACCCCAGCAGATCCATTCCTGA | |
CGCCCTCACTGGCAGGCTCCAGCCCCACAGAGCTTTCTAGACATAAAAGAGCAGGGTCAT | |
GGCATCATTGGTGACACAATTTTAGTAATAAGCTTCAAAACCCATCACTCCACTGAATCC | |
AGGGATGCCAGAATTGAGAGTCCATAGGACCCGTTTAACGGATCCCACATTCAGTAGACG | |
GTTTTTTGTATGCTTCGAGGGAAGGAAGGTATTTTCAAATGCAACTTCTTTTTTTTTTTT | |
CTTGCTCTAGTTAGGGCTGATTTTACCACTGGGCAAATTGCATACATTTGGATCCATGCC | |
ACGCTAAAAACTGTTTATTTTGGAGATCTGTCAGAGGCAAGCACATGGAAGACAAGGGGA | |
TTCTGGTTTGAAAAGGCAATTCTCATCCAGACAGATTCAGATGGAGAGGAGCGGTGTGGA | |
TTAAAATGCGCCGAAGTGGTAATGCCGTTTATCCCGTTTGCCTTTGTTACTCTGTGATTA | |
AATGGTATTTTTAATTAAGTTTCATTGGGAGCCATAGGTATCGCGGTGGTGAAATCAATT | |
TGACAACCATAAAGGGGAGAGACGGCACAGGCGTGTTGTGATGATTGCGGCTGTAGGGAA | |
AGCCGGGCAGCTTGCAGAGGATGGGTGGGAGGAGGGGAAGCCGGCTAAGAATGACTTCCT | |
GCAAGACAGCAAGGGCACCCCTGGGCCACTGCTGTGTTTGGGAGGCAGGTTTTGGGGGTT | |
GTCAGAAGGCATTCACCTGGTTCTCTCGCTCACCTGAGACACCCGATAGATTCCTGGAAA | |
CTCCAGGAAAGTATCTGAAGATCTGGTTCTCCATTCTCTCTTATTAACAAGGAGAACCAC | |
AAGTGCCCCCCAGATCCCGGCTAGAAGGACCAGACAGCTTTCCACCCCGGTTCCCAGGCA | |
GCCCTGCTCCCATAGTCCTGTGTCCCATCGGCCCCATGCTCCCAGGACAGTCCTAATTCC | |
CACCTCTCAGAACCTTGTCAGCCAAGTTCTTCCTGCTCTCTGGCCCAAATCCTCCTCCTA | |
CATTGGAAACTGAGCCTCTCTGCATCCTCTGCTCTTTCTATCCCGCTGTCATTCATCAGA | |
TTTTCCAAATCTTTGGATTCCTGAGTGGCAGAAGAGGTTTTCTGAGTTTAAGTTCTGATT | |
CTGTGTGTGATTCTCACTCTACCACCTCTTCAAACCTTTGTTGTCTTATCTACAAAATAG | |
AATAGTAGTAATCCATCACCTAAGGTTGTTGTGAAGGTTCAATAAGTTAATGCGTATTTA | |
AAATGCCTCCCACAGTACCTGACATATACTGGGCTTCAGTGAGGTACTAGCTATTATTAT | |
TAACCAAGTTTCCTGTGGTAACAGTTGTAGCTTTGTGACTGGGCCAAATCACTTAACCCC | |
TCTGCGCTCCAGTCTTTGTTTCTATAATGGGGATGATGATAATGCCTAGCTCATTGGATT | |
GTTCTGTCCCCTACGATCAGCCATGTTAAGTGATTCATATCATGTCTGGTACTTAAAAAT | |
CACGCCACGCATGTACATTATTATGATGAAAAATATGATCCGTGATATCCTGACCAAAAT | |
ATTAAAGGGACTAAAGATAGCTGTGGCTTGTTCAAGAAGAATATTGTGTCACTATCCCAT | |
ATATTATCCCATTTGCTCTTCACAGCTTCCATTTTTCGCTAGGCGGATGGCATGGAACTT | |
TTTATAAATGAGATATTATGAAAAATGATGTTTTAGGACTCTCATTTCTACAGTGGGAGT | |
AGGTCACCCATTGCAATTTTGGATTTGCTTAAAAAAATTCTTGCCATCACCTTCTAATGG | |
ATGATCTGTGTACAACAATTGTTTATTGACTCTGAATGTCTAAGTACCAGGGTCAGTCTA | |
TTTCAAGGGGAGGGAAGCATTAATTAACCTCCAGCATTAGATTCAGTGATTCTTTTCCAA | |
TGATGCAGTTCATGACTTTGCTCGCATTTACTTTTCATCAATCCTGAAAGAATTGAGGTA | |
AAATAGTTCCTCTGCACATGTGTGTCAAGCTAAATGGATAACAGCAGATACAGATCTGTT | |
TGCCTGTCTGCACTTGCCTTTAGACAAAATTCATCAATTTTACAAAAGCCACTGACTAAA | |
CATGGCACCAATACAAATGAAGCACTTCTAGCAGGCGGAGATTCCCTTTGTTTCTGATCT | |
GGTAAATGCGGTAGTTTCCTGCTGAGAGATGGGAAGTGCTGGCCTAGGACAGCAAGGTGC | |
CCTACAGGTGGGGCCAAAAGGGTCAAGACCGTTCTACAGGAAGTTTAGGAGAAGTTCAAT | |
GGTTCCAGATCCTGTGTGCTTCGGGTAATTCTGACCCTCTTCATTAGTGATAATGGCATG | |
AAGCTCTTTCACACAGTCTTTTTTTTTTTTCTTTTTTTTTTTCAGACAGGGTCTCACCCT | |
GTCACGTAGGCTGGAGTGCAGTGGTGAGATCACGGCTCACTGCAGCCTCGACTTCATGGG | |
CTCAAGCGATTCTCCTGCCTCAGCCTCCTAAGTAGTCGGGATCATAGGCACTTGCCACCA | |
CATCCGGCTAATTTTTTTGTAGAGACAGGATTTCACCACATTACACAGGCTGGTTTCAAA | |
CTCCGAGGCTCAAGTGATCTGCCTGCATCGGCCTCCCAAAGCGCTGAGATTACAAGCGTG | |
AGCCACTACGCCTTGCCCTCCACACAGCCTTGCTTGGTGTTAAAGATTAAACAAAGACCA | |
CAGGTGATCACTGTCTTCGTGGTGCCAGTTTCAAGGGCACCCTTCTTCCCTTCCCAGCCT | |
CCGAGAGAAGGAGAGAGGGTCCACAAGCCAGATCCATCCCCATCCACACAGGTAAAACCA | |
CGACTGTGCAGCTAGCAGGTGGAGATAACATTTGGAAAAAGGCTTTGTAAATGCTAAAGT | |
CCTACTCAAGTCCAAGGGAGAGAAATTATTATTATTCGTTTTGTGAAACCAATTTAGTTT | |
GGCTGGGTAATGGAAGAATTTCTACATACATTCATTACTTCTGATCAGGCAAGACCAGTC | |
TGACACAGGAACAGTCTATGGCTCACTCTTAAAGCCACAGCAGGCTGCCAGGGCTTGGAG | |
AAATAGAAACCTCTCTTGCACAAGAATAGTCTCAATGAATCATGTTAAGGCCTCTTTAGG | |
TTTTTCAGACTCCATGCACCCTGTGGAAACTGCCTTTCTTGAGTAGAGGTACGTTCAGCA | |
CTTCATAAAATAATCTTGGAGCCTCCAGACACACGGATGGAGGAGCATGATTTCATTTGT | |
TTCTTTGCAAAACTGCTGTCCCCAACTGAAAAACCTGATTATCCTTTCAAATAGGGAATT | |
CGGCTTTCCACGTTGGAACCAGAACAGTTAACCTTCAAACCCCCAAGGCTTGCAAGAGAT | |
GAATCAGTTTCTCAGACAGCCAAAGCCGTGGCTTATAACTCATCCAACCCAGAAAACTGG | |
ACCGCTGGTCACCTTCCTTCCCCCTGCCCCCAACTCTGCAGACAGAGGTTTCCCGTTGAT | |
TATGCCTTGATTAGAGTCAGGAGAGAAGCAAACCAGGTATATAGGATTCCATTATCCTTC | |
CCTCCTCTGCTCCCAACCAGGGTCACGCTGAGAGGGATCTCGGTGAACATGTGAACAATC | |
AAGCCATGTTTACCATGGACGTTTAGTTTTCTTTTCTCAAAATCAAAACAGAGTTTAGTA | |
GGCAGCGTATTTCATACATGCCCCTTGATCAATGGAATGATCTGTCAGAAGCCATTAAAG | |
CCCCCATTAGCTTGAATGCATTCAAAGCTAAACTATTGGATCATTTAAGGGCTGCAGTGA | |
TTGTTTTTAATATACCGTACATTGATTTCTCCCTGTGAGCAGCAACATAAGTTTGAAACT | |
AACTGTGTATGACTAAGGCTCCATTTGCTGTCTCCAACCCTCTGTGAGAAGCATGGTTTC | |
ACTTCGACCAGAAATGTCTGTGTATAGTTTTCAAAGAGATGCAGACCCTGTTCGATTTCC | |
CAAGATTTAGACTGGGTCGGGTTGTTATTTCTTTTTTCCCTGAGCTTTCTCCCATTTCTT | |
TGTGCCCATTAAGTGAGCTGTGCGTGCAGAATGGGAGAGGCATCCCTGCCAAGGACTTCA | |
AGTGAAAGGCGGTGGGAGAAATTGTTCTGAAAGCATGAAGCCCAGCTGAGGCCAAAATCA | |
AAGTGAATTTGACAGCCTTGGGCCAGCAAAACTCTGTACCCAGCAGAAAACAATAGATGT | |
GTGGCTGTGTCAGGGGCATCCTCACTGGGACATAGCTTGGGGAGCTGAAGGTACCTTGGA | |
AGGGCCAGATGAGGAAGCTAGCCAAGGCCACAGGCCTTCCTTTGACTGCCATATTGCCAG | |
CTCTTCATAGTATTGACTCTTCAGTCTTAGCCAACACACACTTGTTGATTCCTTCCGGAA | |
TGTCAGACTCTGCTAGCAACACAAGGTCCCTGTCCTCAAAATCCTATTCTTAATCAGCAT | |
TTCTAATTTCTGCCCTTTGCTCATTTTAATACAGAGCCTGAGGATAGGAGAGCAGCGTGG | |
TGAAAGAAGCAATAGTTACCACATTTGCAAAGGCACATACCCCAAAGAGAAGTTTTTAAT | |
ATGTCACACCCATATTTTATAGATGGGGCAATGGAAGTCCAGATGGGAGAAGTTATTTCA | |
GGTGAATTATAGAAACTGGATTTCAAGTTTCTGATAAGTATTGAATTTGGGAAGGCTGTG | |
AACATTCTTGAGCCCCCCTCCCAAGTTCACCTTCAACATCCTAAAGCAGGTTGAAGAGGA | |
AGATGGTTCCAGGTCACTTACAAGAACAGGAACAGCCCCTCCCTCCAAATTTGAGCCCAG | |
AAAGGAGAACCTTTGTTACTCTAGAAAACAGTGTGTGTGCTATTGTTTTCTCCATAGGTC | |
ACAAACATCCACAAGATATTGGTGATTTTACATATTATTAGAGCCACTGAAATTTATGAT | |
GCAGGATATTAACGTCAAAGAGGCCAAGATGCATCATTCAGAACACTGGCAGGTCAAGCA | |
GAAACCACCGTAGTAAAATTGAAAGCTGGAGTCAGCAAAGTATAGCCCACAGCCAAATCT | |
GGCCCATCCCCTGTTCTTATAAAGTTTTATTGGAACGCAGCCATGCTCATCGGTTTATGT | |
ATTATCTATGGCTGTTTCCAACTACAGTGGCAGAGCTGAATAGTTGCAAAGGACCATAGG | |
GCTATCAAAGCCCCAAATAGTCATTGTCTGACCCTTCATAGAAAAATTTTGCTGAACTGT | |
AGTCTAGCTCCAAGGATTGTTGTATCACCTGTGATCGTGCCTATTAAGCAATTAACGTCA | |
TGTCTAGTACTTAGTAATGACTCAGCATGTATCAATTACGATGATAAATATTATCATGGC | |
ATCCAAACCAAAATACTCATGCCAACATCTCTCTGTACAGAAACATGGAAAAAGAGCGAT | |
GCTATTAAGGAGGAAAATGGAGCCAGGAGCAAAACCTAAGGCTATTTCTGAACTAAAGAG | |
GCCTGAATAAGGTAGTGAAAGGACCAGGGAAAGCCTTCCCACGGGGATGGAGAGCCACCT | |
CCTCCCCGGCTTTCTGGTTCAGATGTCTTGTCTCAACAGACGGCAGATTCGCAGGGAAGC | |
AGGCCGAGCCTGATCTTTTCTCCGCTAGAACTGCTCAACAGGTGAAGAATCTTTTTCCAG | |
CACTCCTGAGCCCTTCGGGTCGCGGAACAGTGCGAAGATTATTCCAATGCCTCATTCGGA | |
GAGGTGATAATCTGGTCTGTGGTTTCTTTTTCGGTGGGGCATGGGGTGGGGGTGAGTGTC | |
ATGCTTTCTAAGGCACAGGGCTGACTAAAGGGTGTCCTATTTATAAGTCAGTAAAACACA | |
GCGGCTTCATACTCTGTGCTTATTACCCAGAAGCCCCGGCTCTTAGAGTTTCTATTAAGA | |
TGTACCTCATAAATATATACGCCTCCTATGTACCCACAAAAATTAAAAATAAAAAAATTG | |
AAATCA | |
------------------------------------------------------------------------ | |
Peptide for ENST00000471389 is ENSP00000418823 | |
------------------------------------------------------------------------ | |
>ENSP00000418823 | |
MKRTPTAEEREREAKKLRLLEELEDTWLPYLTPKDDEFYQQWQLKYPKLILREASSVSEE | |
LHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPV | |
KGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVG | |
MGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRS | |
AVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDD | |
LNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFE | |
PAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHE | |
VKREGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDD | |
ASMPLPFDLTDIVSELRGQLLEAKP | |
------------------------------------------------------------------------ | |
Found 83 DB links. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment