Skip to content

Instantly share code, notes, and snippets.

@mkitti
Last active May 3, 2024 17:17
Show Gist options
  • Save mkitti/1b5ff3a562e7b46ea67ed4e7d67f178b to your computer and use it in GitHub Desktop.
Save mkitti/1b5ff3a562e7b46ea67ed4e7d67f178b to your computer and use it in GitHub Desktop.
Napari and Cellpose in a Fresh M1 environment
mamba create -n napari_cellpose -c conda-forge python=3.10
mamba activate napari_cellpose
pip install "napari[all]" cellpose
mamba list
# packages in environment at /Users/kittisopikulm/miniforge3-arm64/envs/napari_cellpose:
#
# Name Version Build Channel
alabaster 0.7.16 pypi_0 pypi
annotated-types 0.6.0 pypi_0 pypi
app-model 0.2.6 pypi_0 pypi
appdirs 1.4.4 pypi_0 pypi
appnope 0.1.4 pypi_0 pypi
asttokens 2.4.1 pypi_0 pypi
attrs 23.2.0 pypi_0 pypi
babel 2.14.0 pypi_0 pypi
build 1.2.1 pypi_0 pypi
bzip2 1.0.8 h93a5062_5 conda-forge
ca-certificates 2024.2.2 hf0a4a13_0 conda-forge
cachey 0.2.1 pypi_0 pypi
cellpose 3.0.7 pypi_0 pypi
certifi 2024.2.2 pypi_0 pypi
charset-normalizer 3.3.2 pypi_0 pypi
click 8.1.7 pypi_0 pypi
cloudpickle 3.0.0 pypi_0 pypi
comm 0.2.2 pypi_0 pypi
dask 2024.4.2 pypi_0 pypi
debugpy 1.8.1 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
docstring-parser 0.16 pypi_0 pypi
docutils 0.21.2 pypi_0 pypi
exceptiongroup 1.2.1 pypi_0 pypi
executing 2.0.1 pypi_0 pypi
fastremap 1.14.1 pypi_0 pypi
filelock 3.14.0 pypi_0 pypi
freetype-py 2.4.0 pypi_0 pypi
fsspec 2024.3.1 pypi_0 pypi
heapdict 1.0.1 pypi_0 pypi
hsluv 5.0.4 pypi_0 pypi
idna 3.7 pypi_0 pypi
imagecodecs 2024.1.1 pypi_0 pypi
imageio 2.34.1 pypi_0 pypi
imagesize 1.4.1 pypi_0 pypi
importlib-metadata 7.1.0 pypi_0 pypi
in-n-out 0.2.1 pypi_0 pypi
ipykernel 6.29.4 pypi_0 pypi
ipython 8.24.0 pypi_0 pypi
jedi 0.19.1 pypi_0 pypi
jinja2 3.1.3 pypi_0 pypi
jsonschema 4.22.0 pypi_0 pypi
jsonschema-specifications 2023.12.1 pypi_0 pypi
jupyter-client 8.6.1 pypi_0 pypi
jupyter-core 5.7.2 pypi_0 pypi
kiwisolver 1.4.5 pypi_0 pypi
lazy-loader 0.4 pypi_0 pypi
libffi 3.4.2 h3422bc3_5 conda-forge
libsqlite 3.45.3 h091b4b1_0 conda-forge
libzlib 1.2.13 h53f4e23_5 conda-forge
llvmlite 0.42.0 pypi_0 pypi
locket 1.0.0 pypi_0 pypi
magicgui 0.8.2 pypi_0 pypi
markdown-it-py 3.0.0 pypi_0 pypi
markupsafe 2.1.5 pypi_0 pypi
matplotlib-inline 0.1.7 pypi_0 pypi
mdurl 0.1.2 pypi_0 pypi
mpmath 1.3.0 pypi_0 pypi
napari 0.4.19.post1 pypi_0 pypi
napari-console 0.0.9 pypi_0 pypi
napari-plugin-engine 0.2.0 pypi_0 pypi
napari-plugin-manager 0.1.0a2 pypi_0 pypi
napari-svg 0.1.10 pypi_0 pypi
natsort 8.4.0 pypi_0 pypi
ncurses 6.4.20240210 h078ce10_0 conda-forge
nest-asyncio 1.6.0 pypi_0 pypi
networkx 3.3 pypi_0 pypi
npe2 0.7.5 pypi_0 pypi
numba 0.59.1 pypi_0 pypi
numpy 1.26.4 pypi_0 pypi
numpydoc 1.7.0 pypi_0 pypi
opencv-python-headless 4.9.0.80 pypi_0 pypi
openssl 3.3.0 h0d3ecfb_0 conda-forge
packaging 24.0 pypi_0 pypi
pandas 2.2.2 pypi_0 pypi
parso 0.8.4 pypi_0 pypi
partd 1.4.1 pypi_0 pypi
pexpect 4.9.0 pypi_0 pypi
pillow 10.3.0 pypi_0 pypi
pint 0.23 pypi_0 pypi
pip 24.0 pyhd8ed1ab_0 conda-forge
platformdirs 4.2.1 pypi_0 pypi
pooch 1.8.1 pypi_0 pypi
prompt-toolkit 3.0.43 pypi_0 pypi
psutil 5.9.8 pypi_0 pypi
psygnal 0.11.0 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pyconify 0.1.6 pypi_0 pypi
pydantic 2.7.1 pypi_0 pypi
pydantic-compat 0.1.2 pypi_0 pypi
pydantic-core 2.18.2 pypi_0 pypi
pygments 2.17.2 pypi_0 pypi
pyopengl 3.1.7 pypi_0 pypi
pyproject-hooks 1.1.0 pypi_0 pypi
pyqt5 5.15.10 pypi_0 pypi
pyqt5-qt5 5.15.13 pypi_0 pypi
pyqt5-sip 12.13.0 pypi_0 pypi
python 3.10.14 h2469fbe_0_cpython conda-forge
python-dateutil 2.9.0.post0 pypi_0 pypi
pytz 2024.1 pypi_0 pypi
pyyaml 6.0.1 pypi_0 pypi
pyzmq 26.0.3 pypi_0 pypi
qtconsole 5.5.1 pypi_0 pypi
qtpy 2.4.1 pypi_0 pypi
readline 8.2 h92ec313_1 conda-forge
referencing 0.35.1 pypi_0 pypi
requests 2.31.0 pypi_0 pypi
rich 13.7.1 pypi_0 pypi
roifile 2024.3.20 pypi_0 pypi
rpds-py 0.18.0 pypi_0 pypi
scikit-image 0.23.2 pypi_0 pypi
scipy 1.13.0 pypi_0 pypi
setuptools 69.5.1 pyhd8ed1ab_0 conda-forge
shellingham 1.5.4 pypi_0 pypi
six 1.16.0 pypi_0 pypi
snowballstemmer 2.2.0 pypi_0 pypi
sphinx 7.3.7 pypi_0 pypi
sphinxcontrib-applehelp 1.0.8 pypi_0 pypi
sphinxcontrib-devhelp 1.0.6 pypi_0 pypi
sphinxcontrib-htmlhelp 2.0.5 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.7 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.10 pypi_0 pypi
stack-data 0.6.3 pypi_0 pypi
superqt 0.6.4 pypi_0 pypi
sympy 1.12 pypi_0 pypi
tabulate 0.9.0 pypi_0 pypi
tifffile 2024.4.24 pypi_0 pypi
tk 8.6.13 h5083fa2_1 conda-forge
tomli 2.0.1 pypi_0 pypi
tomli-w 1.0.0 pypi_0 pypi
toolz 0.12.1 pypi_0 pypi
torch 2.3.0 pypi_0 pypi
tornado 6.4 pypi_0 pypi
tqdm 4.66.4 pypi_0 pypi
traitlets 5.14.3 pypi_0 pypi
typer 0.12.3 pypi_0 pypi
typing-extensions 4.11.0 pypi_0 pypi
tzdata 2024.1 pypi_0 pypi
urllib3 2.2.1 pypi_0 pypi
vispy 0.14.2 pypi_0 pypi
wcwidth 0.2.13 pypi_0 pypi
wheel 0.43.0 pyhd8ed1ab_1 conda-forge
wrapt 1.16.0 pypi_0 pypi
xz 5.2.6 h57fd34a_0 conda-forge
zipp 3.18.1 pypi_0 pypi
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment