gistfile1.txt

(IOOS3) C:\projects\python\example_code\dolfyn\dolfyn-master\test>pip install -U
 dolfyn
Requirement already up-to-date: dolfyn in c:\users\mmartini\appdata\local\contin
uum\miniconda3\envs\ioos3\lib\site-packages\dolfyn-0.7.0-py3.6.egg
Collecting numpy (from dolfyn)
  Downloading numpy-1.12.1-cp36-none-win_amd64.whl (7.7MB)
    100% |████████████████████████████████| 7.7MB 138kB/s
Collecting scipy (from dolfyn)
  Downloading scipy-0.19.0.zip (15.3MB)
    100% |████████████████████████████████| 15.3MB 76kB/s
Collecting h5py (from dolfyn)
  Downloading h5py-2.7.0-cp36-cp36m-win_amd64.whl (1.9MB)
    100% |████████████████████████████████| 1.9MB 519kB/s
Requirement already up-to-date: six in c:\users\mmartini\appdata\local\continuum
\miniconda3\envs\ioos3\lib\site-packages (from h5py->dolfyn)
Building wheels for collected packages: scipy
  Running setup.py bdist_wheel for scipy ... error
  Complete output from command C:\Users\mmartini\AppData\Local\Continuum\Minicon
da3\envs\IOOS3\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users
\\mmartini\\AppData\\Local\\Temp\\1\\pip-build-bc_jx9si\\scipy\\setup.py';f=geta
ttr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.clos
e();exec(compile(code, __file__, 'exec'))" bdist_wheel -d C:\Users\mmartini\AppD
ata\Local\Temp\1\tmp6licto97pip-wheel- --python-tag cp36:
  lapack_opt_info:
  openblas_lapack_info:
    libraries openblas not found in ['C:\\Users\\mmartini\\AppData\\Local\\Conti
nuum\\Miniconda3\\envs\\IOOS3\\lib', 'C:\\', 'C:\\Users\\mmartini\\AppData\\Loca
l\\Continuum\\Miniconda3\\envs\\IOOS3\\libs']
    NOT AVAILABLE

  lapack_mkl_info:
    libraries mkl_core_dll,mkl_intel_lp64_dll,mkl_intel_thread_dll not found in
['C:/Users/mmartini/AppData/Local/Continuum/Miniconda3/envs/IOOS3\\Library\\lib'
]
    NOT AVAILABLE

  atlas_3_10_threads_info:
  Setting PTATLAS=ATLAS
    libraries tatlas,tatlas not found in C:\Users\mmartini\AppData\Local\Continu
um\Miniconda3\envs\IOOS3\lib
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\lib
    libraries tatlas,tatlas not found in C:\
    libraries lapack_atlas not found in C:\
    libraries tatlas,tatlas not found in C:\Users\mmartini\AppData\Local\Continu
um\Miniconda3\envs\IOOS3\libs
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\libs
  <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
    NOT AVAILABLE

  atlas_3_10_info:
    libraries satlas,satlas not found in C:\Users\mmartini\AppData\Local\Continu
um\Miniconda3\envs\IOOS3\lib
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\lib
    libraries satlas,satlas not found in C:\
    libraries lapack_atlas not found in C:\
    libraries satlas,satlas not found in C:\Users\mmartini\AppData\Local\Continu
um\Miniconda3\envs\IOOS3\libs
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\libs
  <class 'numpy.distutils.system_info.atlas_3_10_info'>
    NOT AVAILABLE

  atlas_threads_info:
  Setting PTATLAS=ATLAS
    libraries ptf77blas,ptcblas,atlas not found in C:\Users\mmartini\AppData\Loc
al\Continuum\Miniconda3\envs\IOOS3\lib
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\lib
    libraries ptf77blas,ptcblas,atlas not found in C:\
    libraries lapack_atlas not found in C:\
    libraries ptf77blas,ptcblas,atlas not found in C:\Users\mmartini\AppData\Loc
al\Continuum\Miniconda3\envs\IOOS3\libs
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\libs
  <class 'numpy.distutils.system_info.atlas_threads_info'>
    NOT AVAILABLE

  atlas_info:
    libraries f77blas,cblas,atlas not found in C:\Users\mmartini\AppData\Local\C
ontinuum\Miniconda3\envs\IOOS3\lib
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\lib
    libraries f77blas,cblas,atlas not found in C:\
    libraries lapack_atlas not found in C:\
    libraries f77blas,cblas,atlas not found in C:\Users\mmartini\AppData\Local\C
ontinuum\Miniconda3\envs\IOOS3\libs
    libraries lapack_atlas not found in C:\Users\mmartini\AppData\Local\Continuu
m\Miniconda3\envs\IOOS3\libs
  <class 'numpy.distutils.system_info.atlas_info'>
    NOT AVAILABLE

  C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site-packa
ges\numpy\distutils\system_info.py:1532: UserWarning:
      Atlas (http://math-atlas.sourceforge.net/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [atlas]) or by setting
      the ATLAS environment variable.
    warnings.warn(AtlasNotFoundError.__doc__)
  lapack_info:
    libraries lapack not found in ['C:\\Users\\mmartini\\AppData\\Local\\Continu
um\\Miniconda3\\envs\\IOOS3\\lib', 'C:\\', 'C:\\Users\\mmartini\\AppData\\Local\
\Continuum\\Miniconda3\\envs\\IOOS3\\libs']
    NOT AVAILABLE

  C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site-packa
ges\numpy\distutils\system_info.py:1543: UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    warnings.warn(LapackNotFoundError.__doc__)
  lapack_src_info:
    NOT AVAILABLE

  C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site-packa
ges\numpy\distutils\system_info.py:1546: UserWarning:
      Lapack (http://www.netlib.org/lapack/) sources not found.
      Directories to search for the sources can be specified in the
      numpy/distutils/site.cfg file (section [lapack_src]) or by setting
      the LAPACK_SRC environment variable.
    warnings.warn(LapackSrcNotFoundError.__doc__)
    NOT AVAILABLE

  Running from scipy source directory.
  non-existing path in 'scipy\\integrate': 'quadpack.h'
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "C:\Users\mmartini\AppData\Local\Temp\1\pip-build-bc_jx9si\scipy\setup.
py", line 416, in <module>
      setup_package()
    File "C:\Users\mmartini\AppData\Local\Temp\1\pip-build-bc_jx9si\scipy\setup.
py", line 412, in setup_package
      setup(**metadata)
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\core.py", line 132, in setup
      config = configuration()
    File "C:\Users\mmartini\AppData\Local\Temp\1\pip-build-bc_jx9si\scipy\setup.
py", line 336, in configuration
      config.add_subpackage('scipy')
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\misc_util.py", line 1000, in add_subpackage
      caller_level = 2)
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\misc_util.py", line 969, in get_subpackage
      caller_level = caller_level + 1)
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\misc_util.py", line 906, in _get_configuration_from_
setup_py
      config = setup_module.configuration(*args)
    File "scipy\setup.py", line 15, in configuration
      config.add_subpackage('linalg')
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\misc_util.py", line 1000, in add_subpackage
      caller_level = 2)
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\misc_util.py", line 969, in get_subpackage
      caller_level = caller_level + 1)
    File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\si
te-packages\numpy\distutils\misc_util.py", line 906, in _get_configuration_from_
setup_py
      config = setup_module.configuration(*args)
    File "scipy\linalg\setup.py", line 20, in configuration
      raise NotFoundError('no lapack/blas resources found')
  numpy.distutils.system_info.NotFoundError: no lapack/blas resources found

  ----------------------------------------
  Failed building wheel for scipy
  Running setup.py clean for scipy
  Complete output from command C:\Users\mmartini\AppData\Local\Continuum\Minicon
da3\envs\IOOS3\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users
\\mmartini\\AppData\\Local\\Temp\\1\\pip-build-bc_jx9si\\scipy\\setup.py';f=geta
ttr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.clos
e();exec(compile(code, __file__, 'exec'))" clean --all:

  `setup.py clean` is not supported, use one of the following instead:

    - `git clean -xdf` (cleans all files)
    - `git clean -Xdf` (cleans all versioned files, doesn't touch
                        files that aren't checked into the git repo)

  Add `--force` to your command to use it anyway if you must (unsupported).


  ----------------------------------------
  Failed cleaning build dir for scipy
Failed to build scipy
Installing collected packages: numpy, scipy, h5py
  Found existing installation: numpy 1.11.3
    Uninstalling numpy-1.11.3:
      Successfully uninstalled numpy-1.11.3
Exception:
Traceback (most recent call last):
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\shut
il.py", line 381, in _rmtree_unsafe
    os.unlink(fullname)
PermissionError: [WinError 5] Access is denied: 'C:\\Users\\mmartini\\AppData\\L
ocal\\Temp\\1\\pip-bu_3bpsf-uninstall\\users\\mmartini\\appdata\\local\\continuu
m\\miniconda3\\envs\\ioos3\\lib\\site-packages\\numpy\\core\\multiarray.cp36-win
_amd64.pyd'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\basecommand.py", line 215, in main
    status = self.run(options, args)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\commands\install.py", line 342, in run
    prefix=options.prefix_path,
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\req\req_set.py", line 795, in install
    requirement.commit_uninstall()
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\req\req_install.py", line 767, in commit_uninstall
    self.uninstalled.commit()
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\req\req_uninstall.py", line 142, in commit
    rmtree(self.save_dir)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\_vendor\retrying.py", line 49, in wrapped_f
    return Retrying(*dargs, **dkw).call(f, *args, **kw)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\_vendor\retrying.py", line 212, in call
    raise attempt.get()
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\_vendor\retrying.py", line 247, in get
    six.reraise(self.value[0], self.value[1], self.value[2])
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\_vendor\six.py", line 686, in reraise
    raise value
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\_vendor\retrying.py", line 200, in call
    attempt = Attempt(fn(*args, **kwargs), attempt_number, False)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\utils\__init__.py", line 102, in rmtree
    onerror=rmtree_errorhandler)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\shut
il.py", line 488, in rmtree
    return _rmtree_unsafe(path, onerror)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\shut
il.py", line 378, in _rmtree_unsafe
    _rmtree_unsafe(fullname, onerror)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\shut
il.py", line 378, in _rmtree_unsafe
    _rmtree_unsafe(fullname, onerror)
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\shut
il.py", line 378, in _rmtree_unsafe
    _rmtree_unsafe(fullname, onerror)
  [Previous line repeated 8 more times]
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\shut
il.py", line 383, in _rmtree_unsafe
    onerror(os.unlink, fullname, sys.exc_info())
  File "C:\Users\mmartini\AppData\Local\Continuum\Miniconda3\envs\IOOS3\lib\site
-packages\pip\utils\__init__.py", line 114, in rmtree_errorhandler
    func(path)
PermissionError: [WinError 5] Access is denied: 'C:\\Users\\mmartini\\AppData\\L
ocal\\Temp\\1\\pip-bu_3bpsf-uninstall\\users\\mmartini\\appdata\\local\\continuu
m\\miniconda3\\envs\\ioos3\\lib\\site-packages\\numpy\\core\\multiarray.cp36-win
_amd64.pyd'

(IOOS3) C:\projects\python\example_code\dolfyn\dolfyn-master\test>