BIDS-models for ds000031

ds000031_model.json

{
  "name": "ds000031 example",
  "description": "An example of connectivity analysis using ds000031",
  "input":
    {
 	"task": "rest"
	},
  "blocks": [
	{
	"level": "run",
	"transformations": [
        {
          "name": "load_image_data",
          "input": ["bold"],
          "aggregate": ["mean"],
          "mask": ["Schaefer100"], /* write proper BIDS respecting mask name */
          "output": ["Schaefer100*"]
      }
  ],

},
{
    "level": "session",
    "model":
    {
        "variables": [
            "Schaefer100*",
            "WhiteMatter",
            "CSF",
            "FramewiseDisplacement",
            "aCompCor0",
            "aCompCor1",
            "aCompCor2",
            "aCompCor3",
            "aCompCor4",
            "aCompCor5",
            "X",
            "Y",
            "Z",
            "RotX",
            "RotY",
            "RotZ"
        ],
        "options":
         {
             "confounds": [
                    "WhiteMatter",
                     "CSF",
                     "FramewiseDisplacement",
                     "aCompCor0",
                     "aCompCor1",
                     "aCompCor2",
                     "aCompCor3",
                     "aCompCor4",
                     "aCompCor5",
                     "X",
                     "Y",
                     "Z",
                     "RotX",
                     "RotY",
                     "RotZ"
                 ],
              "high_pass_filter_cutoff_secs": 128
          },
          "variances": [
              {
                "name": "session_level",
                "groupBy": "session"
            }
        ],
        "software":
        {
              "myconnectivitytool":
              {
                  "whitening": ["AR1"], /* Specify type of whitening */
                  "clean": ["True"], /* Eliminate nuisance subspace, however your software performs this */
                  "ConnectivityMeasure": ["correlation"]
              }
         }
     }
}