Skip to content

Instantly share code, notes, and snippets.

@mndoci
Forked from mza/gist:8787
Created September 7, 2008 20:51
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 1 You must be signed in to fork a gist
  • Save mndoci/9315 to your computer and use it in GitHub Desktop.
Save mndoci/9315 to your computer and use it in GitHub Desktop.
Task: Protein lookup
Find protein structure for 1MBN
From PDB
Return sequence of protein
Task: Blast
Run BLAST
Using the protein sequence from Protein lookup task
On uniprot
Select all hits with e < 0.00001
Return list of alignments
Task: Custom visualization
View list of alignments from Blast task
using my_pretty_viewer
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment