rocker/tidyvrese:4.0.1 をベースにradianと日本語フォント、頻用パッケージを追加する

R4.0_2020Jun.Dockerfile

## CRAN repository fixed to June 25, 2020 via RStudio Package Manager
## Ref: https://github.com/rocker-org/rocker-versioned2/blob/master/dockerfiles/Dockerfile_r-ver_4.0.1
# ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/296

FROM rocker/tidyverse:4.0.1

# Change environment to Japanese (Character, DateTime, and Fonts)
ENV DEBCONF_NOWARNINGS=yes \
	LANG=ja_JP.UTF-8 \
	LC_ALL=ja_JP.UTF-8
RUN set -x \
  # install Japanese lung pack (and locales)
	&& apt-get update \
	&& apt-get install -y language-pack-ja-base language-pack-ja \
  # locale settings
	&& sed -i '$d' /etc/locale.gen \
	&& echo "ja_JP.UTF-8 UTF-8" >> /etc/locale.gen \
	&& locale-gen ja_JP.UTF-8 \
	&& /usr/sbin/update-locale LANG=ja_JP.UTF-8 LANGUAGE="ja_JP:ja" \
	&& /bin/bash -c "source /etc/default/locale" \
	&& ln -sf /usr/share/zoneinfo/Asia/Tokyo /etc/localtime \
  # install CJK font
	&& apt-get install -y --no-install-recommends fonts-noto-cjk \
  # cleaning
	&& apt-get clean \
	&& rm -rf /var/lib/apt/lists/*

# Install ssh client, pip3 and required libraries
RUN set -x \
	&& apt-get update -qq \
	&& apt-get install -y --no-install-recommends \
		ssh \
		python3-pip \
		graphviz \
		libgraphviz-dev \
		imagemagick \
		libmagick++-dev \
		libgl1-mesa-dev \
		libglu1-mesa-dev \
		librsvg2-dev \
		libxft-dev \
	&& apt-get clean \
	&& rm -rf /var/lib/apt/lists/*

# Install R packages
RUN set -x \
	&& Rscript -e "BiocManager::install(c('graph', 'Rgraphviz'))" \
	&& install2.r --error --deps TRUE --ncpus -1 --skipinstalled \
		pacman \
		tidylog \
		furrr \
		glmnetUtils \
		pROC \
		cmprsk \
		psych \
		clinfun \
		car \
		ggfortify \
		ggsci \
		tableone \
  # since package "export" was removed from CRAN on 2020-02-21,
  # install dev version from GitHub repo (commit d29650b / 2020-06-22)
		officer \
		rvg \
		openxlsx \
		flextable \
		xtable \
		rgl \
		stargazer \
		tikzDevice \
	&& installGithub.r tomwenseleers/export@d29650b

# Install radian: A 21 century R console
RUN set -x \
	&& pip3 install -U radian \
  # Radian settings
	&& echo 'options(radian.color_scheme = "monokai")' > /home/rstudio/.radian_profile \
	&& echo 'options(radian.auto_match = TRUE)' >> /home/rstudio/.radian_profile \
	&& echo 'options(radian.prompt = "\033[0;32mr$>\033[0m ")' >> /home/rstudio/.radian_profile \
	&& echo 'options(radian.escape_key_map = list(list(key = "m", value = " %>% ")))' >> /home/rstudio/.radian_profile \
	&& chown rstudio:rstudio /home/rstudio/.radian_profile

# start RStudio Server
CMD ["/init"]