rocker/tidyverse:3.6.1をベースに日本語設定や頻用パッケージを追加する

2019Dec.Dockerfile

# R 3.6.1 and RStudio server with some packages.

FROM rocker/tidyverse:3.6.1

# Change environment to Japanese (Character and DateTime)
#  Ref: Dockerfile of rockerjp/tidyverse
ENV LANG=ja_JP.UTF-8 \
	LC_ALL=ja_JP.UTF-8
RUN set -x \
	&& sed -i '$d' /etc/locale.gen \
	&& echo "ja_JP.UTF-8 UTF-8" >> /etc/locale.gen \
	&& locale-gen ja_JP.UTF-8 \
	&& /usr/sbin/update-locale LANG=ja_JP.UTF-8 LANGUAGE="ja_JP:ja" \
	&& /bin/bash -c "source /etc/default/locale" \
	&& ln -sf  /usr/share/zoneinfo/Asia/Tokyo /etc/localtime

# Install Japanese fonts (Noto Sans CJK JP - Regular)
RUN set -x \
	&& wget -q https://noto-website-2.storage.googleapis.com/pkgs/NotoSansCJKjp-hinted.zip \
	&& unzip NotoSansCJKjp-hinted.zip NotoSansCJKjp-Regular.otf \
	&& mv NotoSansCJKjp-Regular.otf /usr/share/fonts/type1/ \
	&& chmod 644 /usr/share/fonts/type1/NotoSansCJKjp-Regular.otf \
	&& fc-cache -fv \
	&& rm NotoSansCJKjp-hinted.zip

# Install ssh client and required libraries
RUN set -x \
	&& apt-get update -qq \
	&& apt-get install -y --no-install-recommends \
		graphviz \
		libgraphviz-dev \
		libglu1-mesa-dev \
		libzmq3-dev \
		ssh \
	&& apt-get clean \
	&& rm -rf /var/lib/apt/lists/*

# Install R packages
RUN set -x \
	&& Rscript -e "BiocManager::install(c('graph', 'Rgraphviz'))" \
	&& install2.r --error --deps TRUE --ncpus -1 --skipinstalled \
		pacman \
		pROC \
		cmprsk \
		psych \
		clinfun \
		car \
		tableone \
		ggfortify \
		ggsci \
		export \
		tidylog \
		furrr

# start RStudio Server
CMD ["/init"]