Created
May 24, 2012 19:39
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import numpy as np | |
# making frames with Gaussian noise | |
def makeframes(mu,sigma): | |
frames = np.random.normal(mu,sigma,(100,2500)) | |
return(frames) | |
# making reference using median combination | |
def medianref(frames): | |
ref_med = np.median(frames, axis=0) | |
return(ref_med) | |
# subtracting median reference | |
def mediansub(frames,ref_med_input): | |
ref_med_mat = np.tile(ref_med_input, (100,1)) | |
results = frames - ref_med_mat | |
return(results) | |
# making reference with random coefficients | |
def randomref(frames): | |
reference = np.zeros((100,2500)) | |
for i in range(100): | |
coeff_raw = (np.random.rand(100)-0.5)/5. # (100) | |
coeff = coeff_raw/np.sum(coeff_raw) # (100) | |
ref_ran = np.sum(np.multiply(frames.T, coeff), axis=1) # (2500) | |
reference[i]=ref_ran | |
return(reference) | |
# subtracting random reference | |
def randomsub(frames,ref_ran_input): | |
results = frames - ref_ran_input | |
return(results) | |
# combining into one frame | |
def combine(result_input): | |
result = np.median(result_input, axis=0) | |
return(result) | |
# calculating mean and std | |
def calc(frame): | |
mean = np.mean(frame) | |
sig = np.std(frame) | |
return(mean, sig) | |
# main | |
if __name__ == '__main__': | |
mu = 100. | |
sigma = 10. | |
np.random.seed(seed=100) | |
frames = makeframes(mu,sigma) | |
medref = medianref(frames) | |
result_med = mediansub(frames,medref) | |
ret = calc(result_med) | |
print('median combination') | |
print('mean=%f sigma=%f' % (ret[0],ret[1])) | |
frames = makeframes(mu,sigma) | |
ranref = randomref(frames) | |
result_ran = randomsub(frames,ranref) | |
comb_ran = combine(result_ran) | |
ret = calc(comb_ran) | |
print 'random combination' | |
print('mean=%f sigma=%f' % (ret[0],ret[1])) |
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import math | |
import sys | |
import os | |
import random | |
import numpy | |
# making frames with Gaussian noise | |
def makeframes(mu,sigma): | |
frames = numpy.array(numpy.zeros((100,2500),'f')) | |
for i in range(0,100): | |
data = numpy.array(numpy.zeros((2500),'f')) | |
for j in range(0,2500): | |
# data[j] = random.gauss(mu,sigma) | |
data[j] = numpy.random.normal(mu,sigma) | |
frames[i] = data | |
return frames | |
# making reference using median combination | |
def medianref(frames): | |
ref_med = numpy.array(numpy.zeros((2500),'f')) | |
inverse = numpy.array(numpy.zeros((2500,100),'f')) | |
inverse = frames.T | |
for j in range(0,2500): | |
ref_med[j]= numpy.ma.median(inverse[j]) | |
return ref_med | |
# making reference with random coefficients | |
def randomref(frames): | |
coeff = numpy.array(numpy.zeros((100),'f')) | |
coeff_raw = numpy.array(numpy.zeros((100),'f')) | |
reference = numpy.array(numpy.zeros((100,2500),'f')) | |
ref_ran = numpy.array(numpy.zeros((2500),'f')) | |
sum = 0. | |
for i in range(0,100): | |
ref_ran = numpy.zeros((2500),'f') | |
sum=0. | |
for l in range(0,100): | |
# coeff_raw[l]=(random.random()-0.5)/5. | |
coeff_raw[l]=(numpy.random.rand()-0.5)/5. | |
sum += coeff_raw[l] | |
for l in range(0,100): | |
coeff[l]=coeff_raw[l]/sum | |
for j in range(0,2500): | |
for k in range(0,100): | |
ref_ran[j] += frames[k][j]*coeff[k] | |
reference[i]=ref_ran | |
return reference | |
# subtracting median reference | |
def mediansub(frames,ref_med_input): | |
results = numpy.array(numpy.zeros((100,2500),'f')) | |
result = numpy.array(numpy.zeros((2500),'f')) | |
frame = numpy.array(numpy.zeros((2500),'f')) | |
for j in range(0,100): | |
frame = frames[j] | |
result=frame-ref_med_input | |
results[j]=result | |
return results | |
# subtracting random reference | |
def randomsub(frames,ref_ran_input): | |
results = numpy.array(numpy.zeros((100,2500),'f')) | |
result =numpy.array(numpy.zeros((2500),'f')) | |
for i in range(0,100): | |
frame = frames[i] | |
reference = ref_ran_input[i] | |
for j in range(0,2500): | |
result[j]=frame[j]-reference[j] | |
results[i]=result | |
return results | |
# combining into one frame | |
def combine(result_input): | |
inverse = numpy.array(numpy.zeros((2500,100),'f')) | |
inverse = result_input.T | |
result = numpy.array(numpy.zeros((2500),'f')) | |
for k in range(0,2500): | |
result[k] = numpy.ma.median(inverse[k]) | |
return result | |
# calculating mean and std | |
def calc(frame): | |
mean = numpy.mean(frame) | |
sig = numpy.std(frame) | |
return mean, sig | |
# main | |
if __name__ == '__main__': | |
mu = 100. | |
sigma = 10. | |
numpy.random.seed(seed=100) | |
frames = makeframes(mu,sigma) | |
medref = medianref(frames) | |
result_med = mediansub(frames,medref) | |
# comb_med = combine(result_med) | |
# ret = calc(comb_med) | |
ret = calc(result_med) | |
print 'median combination' | |
print 'mean=',ret[0], 'sigma=',ret[1] | |
frames = makeframes(mu,sigma) | |
ranref = randomref(frames) | |
result_ran = randomsub(frames,ranref) | |
comb_ran = combine(result_ran) | |
ret = calc(comb_ran) | |
print 'random combination' | |
print 'mean=',ret[0], 'sigma=',ret[1] |
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