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monogenea/2-umap.py

Last active October 10, 2020 13:14
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2-umap.py
# Check first five columns in matrix.csv
#!cut -d, -f-5 matrix.csv | head
# Import data with Bash command discarding first column
matrix = dt.fread(cmd='cut -d, -f2- matrix.csv',
header=True, sep=',', columns=dt.int32) # ~7 GB (76533, 50281)
# Import metadata
metadata = pd.read_csv('metadata.csv')
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