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monogenea/1-umap.py

Last active October 10, 2020 13:09
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1-umap.py
# Imports
#!pip install datatable
import os, umap
import numpy as np
import pandas as pd
import datatable as dt
import seaborn as sns
os.chdir('PATH/TO/WDIR')
# Download expression matrix (matrix.csv) and metadata (metadata.csv)
!wget https://idk-etl-prod-download-bucket.s3.amazonaws.com/aibs_human_m1_10x/matrix.csv
!wget https://idk-etl-prod-download-bucket.s3.amazonaws.com/aibs_human_m1_10x/metadata.csv
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