bsmith89

# ====================
#  Project Makefile
# ====================
#  User Configuration {{{1
# ====================

# Major targets {{{2
.PHONY: figs res
figs:
# [Partially redacted]

radaniba

#You can parse Genbank bank files with BioRuby the standard way, but there's a hidden problem.  If the file ends with blank lines, i.e. after the genbank terminator (two forwards slashes, //) there are empty lines, BioRuby reads these as additional, empty records. However, you can route around this by trimming the blank lines before handing it to the parser.


puts "Parsing seqs ..."
  Bio::FlatFile.auto("foo.genbank").each_entry { |gb|
     puts "Sequence '#{gb.to_biosequence.entry_id}'"
  }
  puts "Finished."

which will print the id of every sequence in the file. However, if the file ends with blank lines, i.e. after the genbank terminator (two forwards slashes, which the wiki markup doesn't like) there are empty lines, BioRuby reads these as additional, empty records:

markheckmann

library(colorspace)

polar2cart <- function(r, theta)   # polar to cartesian coords
{
  rad <- theta * pi /180
  cbind(x = r*cos(rad),
        y = r*sin(rad))
}

h <- seq(0, 360, len=150)     # hue values

rmcgibbo

#include "stdio.h"
#include "stdlib.h"
#include "emmintrin.h"
#include "time.h"

float ssesum_aligned(float* a, size_t n, double* time) {
  int i;
  float* p;
  float result;
  __m128 v1, v2;

CarlSmotricz

; a tiny, simple CAD program prototype in Clojure.
; Carl Smotricz, 2015-07-22

(ns nanocad.core
  (:use [seesaw core graphics])
  (:require [seesaw.mouse :refer [location]])
  (:import [javax.swing AbstractAction]))

(def CANVAS-WIDTH 400)

alimuldal

#!/usr/bin/env python
import numpy
from numpy.distutils.system_info import get_info
import sys
import timeit

print("version: %s" % numpy.__version__)
print("maxint:  %i\n" % sys.maxsize)

info = get_info('blas_opt')

depp

This is what happens when I run the program.  Note that 2 and 4 appear twice, but 0 and 1 never appear.  The output is non-deterministic, because there is a race condition, the output could be almost anything.

Arg = 2
Arg = 4
Arg = 3
Arg = 5
Arg = 6
Arg = 2
Arg = 7
Arg = 8

depp

Notice how each number appears only once.

The order is still scrambled, but we don't care about the order.

Arg = 1
Arg = 4
Arg = 2
Arg = 6
Arg = 3
Arg = 7

jmackie

Build the purescript bundle:

spago init
spago install aff console effect web-file web-xhr
spago build && spago bundle-module -m Upload -t index.cjs && browserify index.cjs -s Upload -o index.js

Spin up a dumb server to accept the POST request

jbub

git rebase --interactive HEAD~2

#  we are going to squash c into b 
pick b76d157 b
pick a931ac7 c

# squash c into b
pick b76d157 b
s a931ac7 c