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November 14, 2019 18:57
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import pandas as pd | |
from sklearn.linear_model import LogisticRegression | |
from sklearn.ensemble import RandomForestClassifier | |
from sklearn.model_selection import GridSearchCV, RepeatedStratifiedKFold | |
from sklearn.pipeline import Pipeline | |
from sklearn.compose import ColumnTransformer | |
from sklearn.preprocessing import OneHotEncoder, StandardScaler | |
from sklearn.metrics import f1_score, classification_report | |
from sklearn.impute import SimpleImputer | |
from sklearn.model_selection import train_test_split | |
titanic = pd.read_csv('./titanic.csv') | |
X = titanic.drop('survived', axis = 1) | |
y = titanic.survived | |
X_train, X_holdout, y_train, y_holdout = train_test_split(X, y, stratify = y, test_size = 0.2, random_state = 42) | |
categorical_features = ['pclass', 'sex', 'embarked'] | |
categorical_transformer = Pipeline( | |
[ | |
('imputer_cat', SimpleImputer(strategy = 'constant', fill_value = 'missing')), | |
('onehot', OneHotEncoder(handle_unknown = 'ignore')) | |
] | |
) | |
numeric_features = ['age', 'sibsp', 'parch', 'fare'] | |
numeric_transformer = Pipeline( | |
[ | |
('imputer_num', SimpleImputer()), | |
('scaler', StandardScaler()) | |
] | |
) | |
preprocessor = ColumnTransformer( | |
[ | |
('categoricals', categorical_transformer, categorical_features), | |
('numericals', numeric_transformer, numeric_features) | |
], | |
remainder = 'drop' | |
) | |
pipeline = Pipeline( | |
[ | |
('preprocessing', preprocessor), | |
('clf', LogisticRegression()) | |
] | |
) | |
params = [ | |
{ | |
'clf': [LogisticRegression()], | |
'clf__solver': ['liblinear'], | |
'clf__penalty': ['l1', 'l2'], | |
'clf__C': [0.01, 0.1, 1, 10, 100], | |
'clf__random_state': [42], | |
'preprocessing__numericals__scaler': [StandardScaler(), 'passthrough'], | |
'preprocessing__numericals__imputer_num__strategy': ['mean', 'median'] | |
}, | |
{ | |
'clf': [RandomForestClassifier()], | |
'clf__n_estimators': [5, 50, 100, 250], | |
'clf__max_depth': [5, 8, 10], | |
'clf__random_state': [42], | |
'preprocessing__numericals__scaler': [StandardScaler(), 'passthrough'], | |
'preprocessing__numericals__imputer_num__strategy': ['mean', 'median'] | |
} | |
] | |
rskf = RepeatedStratifiedKFold(n_splits = 5, n_repeats = 2, random_state = 42) | |
cv = GridSearchCV(pipeline, params, cv = rskf, scoring = ['f1', 'accuracy'], refit = 'f1', n_jobs = -1) | |
cv.fit(X_train, y_train) | |
print(f'Best F1-score: {cv.best_score_:.3f}\n') | |
print(f'Best parameter set: {cv.best_params_}\n') | |
print(f'Scores: {classification_report(y_train, cv.predict(X_train))}') | |
preds = cv.predict(X_holdout) | |
print(f'Scores: {classification_report(y_holdout, preds)}\n') | |
print(f'F1-score: {f1_score(y_holdout, preds):.3f}') |
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