moritzschaefer

#!/usr/bin/env python
# coding: utf-8
'''
Simply run this script in the output folder of an AlphaFold-run. For more infos on the pLDDT, refer to the original AlphaFold publication (https://www.nature.com/articles/s41586-021-03819-2)

https://github.com/deepmind/alphafold/issues/8
'''


import json

afrendeiro

from pathlib import Path

import parmap
import requests


def update(gsll):
    return [g for g in gsll if not (output_dir / (g + ".gmt")).exists()]

dpryan79

#!/usr/bin/env python
import argparse
import pyBigWig

parser = argparse.ArgumentParser(description="Convert the chromosome names of a bigWig file.")
parser.add_argument("conv", metavar="conversion.txt", help="Text file with two columns, the first a chromosome name and the second the converted chromosome name.")
parser.add_argument("input", metavar="input.bigWig", help="Input bigWig file")
parser.add_argument("output", metavar="output.bigWig", help="Output bigWig file name")
args = parser.parse_args()

emmanuelrosa

{ stdenv, fetchurl }:

let
  fetchfont = name: num: sha:
    fetchurl {
      url = "https://fontsup.com/download/${builtins.toString num}.html";
      sha256 = sha;
      name = "${name}";
    };
in stdenv.mkDerivation rec {

dblyon

class Volcano(object):
    """
    create a Volcano plot from log2(ratios) and corresponding -log10(p_values)
    ToDo: take care of infinite ratios
    
    e.g. usage
    import pandas as pd
    import numpy as np
    import matplotlib.pyplot as plt
    import matplotlib

domenkozar

Documents

Repair manual: http://topics-cdn.dell.com/pdf/xps-15-9560-laptop_setup%20guide_en-us.pdf

I have:

Product Name: XPS 15 9560
System BIOS: 1.0.3
Service Tag: 3862XF2

fud

for i in $(docker-machine ls | awk '{print $1}'); do
   docker-machine ssh $i -- ls /swapfile || docker-machine ssh $i "fallocate -l 512M /swapfile && chmod 400 /swapfile && mkswap /swapfile" &&
   docker-machine ssh $i "swapon /swapfile && echo '/swapfile none swap defaults 0 0' >> /etc/fstab" &>/dev/null;
done

adham90

SPC s c remove highlight

**** Files manipulations key bindings
Files manipulation commands (start with ~f~):

| Key Binding | Description                                                    |
|-------------+----------------------------------------------------------------|
| ~SPC f c~   | copy current file to a different location                      |
| ~SPC f C d~ | convert file from unix to dos encoding                         |
| ~SPC f C u~ | convert file from dos to unix encoding                         |

kennethkalmer

daemon off;

worker_processes 4;

events {
  use epoll;
  accept_mutex on;
  multi_accept on;
  worker_connections 1024;
}

mattratleph

vimdiff cheat sheet

##git mergetool

In the middle file (future merged file), you can navigate between conflicts with ]c and [c.

Choose which version you want to keep with :diffget //2 or :diffget //3 (the //2 and //3 are unique identifiers for the target/master copy and the merge/branch copy file names).

:diffupdate (to remove leftover spacing issues)

:only (once you’re done reviewing all conflicts, this shows only the middle/merged file)