moxgreen
moxgreen
/ Sequencing_adaptors.fasta
Created
February 3, 2023 13:36
— forked from photocyte/Sequencing_adaptors.fasta
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| >Illumina Single End Apapter 1 | |
| ACACTCTTTCCCTACACGACGCTGTTCCATCT | |
| >Illumina Single End Apapter 2 | |
| CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT | |
| >Illumina Single End PCR Primer 1 | |
| AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT | |
| >Illumina Single End PCR Primer 2 | |
| CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT | |
| >Illumina Single End Sequencing Primer | |
| ACACTCTTTCCCTACACGACGCTCTTCCGATCT |
moxgreen
/ bcl2fastq2_2_20_0_xml_writer_make_settings.patch
Created
May 15, 2018 09:02
— forked from moonwatcher/bcl2fastq2_2_20_0_xml_writer_make_settings.patch
patch for compiling bcl2fastq on linux with boost 1.58
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| --- src/cxx/lib/io/Xml.cpp 2018-01-05 14:12:25.000000000 -0500 | |
| +++ src/cxx/lib/io/Xml.cpp 2018-01-05 14:12:35.000000000 -0500 | |
| @@ -168,19 +168,11 @@ | |
| if (!tree.empty()) | |
| { | |
| unindex(*tree.begin(), treeWithIndexAttributes); | |
| -#ifndef WIN32 | |
| - boost::property_tree::write_xml(os, treeWithIndexAttributes, boost::property_tree::xml_writer_make_settings(' ', 2)); | |
| -#else | |
| boost::property_tree::write_xml(os, treeWithIndexAttributes, boost::property_tree::xml_writer_make_settings<std::string>(' ', 2)); |
moxgreen
/ partial_corr.py
Last active
August 29, 2015 14:17
— forked from fabianp/partial_corr.py
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| """ | |
| Partial Correlation in Python (clone of Matlab's partialcorr) | |
| This uses the linear regression approach to compute the partial | |
| correlation (might be slow for a huge number of variables). The | |
| algorithm is detailed here: | |
| http://en.wikipedia.org/wiki/Partial_correlation#Using_linear_regression | |
| Taking X and Y two variables of interest and Z the matrix with all the variable minus {X, Y}, |