Example of getting Runs list from SL

get-runs.py

#!/usr/bin/env python
"""Get a List of Runs from SMRT Link"""
# From:http://bitbucket.nanofluidics.com:7990/projects/SL/repos/pbcommand/browse/pbcommand/cli/examples/template_simple.py

import os
import sys
import logging

from pbcommand.validators import validate_file
from pbcommand.utils import setup_log
from pbcommand.cli import get_default_argparser_with_base_opts, pacbio_args_runner
from pbcommand.services._service_access_layer import SmrtLinkAuthClient
import requests


log = logging.getLogger(__name__)

__version__ = "0.1.0"
__author__ = "mkocher"


def get_parser():
    """Define Parser. Use the helper methods in validators to validate input"""
    p = get_default_argparser_with_base_opts(__version__, __doc__)
    p.add_argument('host', type=str, default="smrtlink-alpha", help="SL Host")
    p.add_argument('-u', '--user', type=str, default="admin", help="User")
    p.add_argument('-p', '--password', type=str, default=None,
                   help="User Password", required=True)
    return p


def raw_get(c, u):
    return requests.get(u, headers=c._get_headers(), verify=False).json()


def run_main(host, user, password):
    """
    Get a list of Runs.
    """
    c = SmrtLinkAuthClient(host, user, password)

    # this was added post SL-6.0.0 release to
    # c.get_runs()
    # using a raw call to enable working on 6.0.0 systems
    runs_d = raw_get(c, c._to_url("/smrt-link/runs"))
    for run in runs_d:
        print (run['uniqueId'], run['status'], run['name'])
    return 0


def args_runner(args):
    #log.debug("Raw args {a}".format(a=args))
    return run_main(args.host, args.user, args.password)


def main(argv):
    return pacbio_args_runner(argv[1:],
                              get_parser(),
                              args_runner,
                              log,
                              setup_log_func=setup_log)


if __name__ == '__main__':
    sys.exit(main(sys.argv))