gen-conda-packed-env-bmm-analysis.sh

#!/bin/bash

# To be run as:
# $ docker run -it --rm -v $PWD:/build quay.io/condaforge/linux-anvil-comp7:latest bash /build/gen-conda-packed-env-bmm-analysis.sh

set -e

umask 0002

. /opt/conda/etc/profile.d/conda.sh

conda install conda -y

env_name="bmm-analysis"
python_version="=3.9"
pkg=""
extra_packages="numpy scipy hdf5 matplotlib pyqt pyyaml pyside2"
channels="-c conda-forge"

time conda create \
    -n ${env_name} \
    ${channels} --override-channels -y \
    python${python_version} conda-pack \
    ${pkg} \
    ${extra_packages}

conda activate ${env_name}

time conda env export \
    -n ${env_name} \
    -f /build/${env_name}.yml \
    ${channels} --override-channels

# Assuming the "build" dir is mounted via the "docker run -v ..."
time conda-pack -o /build/${env_name}.tar.gz

time openssl sha256 /build/${env_name}.tar.gz > /build/${env_name}-sha256sum.txt
chmod -v 664 /build/${env_name}[.-]*

conda deactivate