Michael Shamash mshamash
mshamash
/ stacked_bar_plot-colour_per_phylum_and_species.R
Created
October 9, 2021 20:33
Code snippet for generating stacked bar plots, coloured according to species with a unique gradient of colours depending on the phylum
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| sub <- "MySubjectID" | |
| taxa <- mag_abundance_table %>% | |
| filter(subject == sub & relabund > 0.001) %>% | |
| ungroup() %>% | |
| mutate(phylum = as.factor(phylum), | |
| species = fct_reorder(species, 10*as.integer(phylum))) | |
| colours <- PrepareColours(taxa) |