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@msuprun
msuprun / mergeEset
Created June 20, 2015 15:53
R combining / merging EspressionSets
# using Merge
lists <- list(eset,eset3)
eset_both <- inSilicoMerging::merge(lists, method='NONE')
# using combine
eset_both2 <- combine(eset, eset3)
# Manually
neweset<-ExpressionSet(assayData=cbind(exprs(eset),exprs(eset3)[featureNames(eset),]))
phenoData(neweset)<-new("AnnotatedDataFrame",rbind(pData(eset),pData(eset3))[sampleNames(neweset),])
@msuprun
msuprun / gist:9885235
Last active August 29, 2015 13:57
Hamlet word count SC-NYU-Bootcamp 2014 - Python
Python
Hamlet example
data here: http://www.gutenberg.org/cache/epub/2265/pg2265.txt
def read_Hamlet():
my_file = open("hamlet.txt")
return my_file
my_file = read_Hamlet()