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@mtholder
Created October 7, 2021 16:55
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Run from the subproblems subdirectory of the output of the open tree of life synthesis output to generate a TSV of # internal nds in taxonomy vs solution.
#!/bin/bash
if ! test -d cruft ; then
mkdir cruft
fi
for i in ott*.tre ; do
j=`echo ${i} | sed -E 's/^ott//' | sed -E 's/\.tre//'`
echo $j >&2
tail -n1 ${i} > cruft/tax.tre
ntax=`otc-degree-distribution cruft/tax.tre 2>&1 | tail -n2 | head -n1 | awk '{print $1}'`
nsoln=`otc-degree-distribution ../subproblem_solutions/${i} 2>&1 | tail -n2 | head -n1 | awk '{print $1}'`
echo -e "$j\thttps://tree.opentreeoflife.org/opentree/argus/opentree13.4@ott${j}\t${ntax}\t${nsoln}"
done
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