grab the newick trees from timetree for your personal research and teaching use. Assumes https://gist.github.com/mtholder/615f1f77af9b7db8f0f9220fa514ab07 in same dir

all.bash

#!/bin/bash
curl 'http://www.timetree.org/references' > studies.html
grep citation_data studies.html | sed -E 's:.*citation_data/::' | sed -E 's/".*//' > ids.txt
for i in `cat ids.txt` ; do
    echo $i
    if ! test -f "${i}.tre" ; then
        python grab.py "$i" > "${i}.tre" || exit 1
    fi
    sleep 2
done