Created
September 18, 2015 10:47
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samtools_sort.diff
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| diff --git a/lib/galaxy/datatypes/dataproviders/dataset.py b/lib/galaxy/datatypes/dataproviders/dataset.py | |
| index 1fe1868..c34cd42 100644 | |
| --- a/lib/galaxy/datatypes/dataproviders/dataset.py | |
| +++ b/lib/galaxy/datatypes/dataproviders/dataset.py | |
| @@ -633,6 +633,7 @@ class SamtoolsDataProvider( line.RegexLineDataProvider ): | |
| command.extend( self.to_options_list( options_string, options_dict ) ) | |
| command.append( self.dataset.file_name ) | |
| command.extend( regions ) | |
| + command.extend( ['| samtools sort -']) | |
| return command | |
| def to_options_list( self, options_string, options_dict ): |
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