Skip to content

Instantly share code, notes, and snippets.

Embed
What would you like to do?
ssl error run 1
Output:
```
run at 2021-05-13 17:27:28.334900
run at 2021-05-13 17:27:30.287149
run at 2021-05-13 17:27:32.254218
run at 2021-05-13 17:27:34.109459
run at 2021-05-13 17:27:36.062005
wait at 2021-05-13 17:27:36.433094
wait at 2021-05-13 17:27:37.513581
run at 2021-05-13 17:27:37.880589
wait at 2021-05-13 17:27:38.607179
run at 2021-05-13 17:27:39.675230
wait at 2021-05-13 17:27:39.703162
```
Error:
```
Exception in thread Thread-1:
Traceback (most recent call last):
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 954, in _bootstrap_inner
self.run()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 892, in run
self._target(*self._args, **self._kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 926, in _wait_for_jobs
status = self._retry_request(request)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request
raise ex
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request
return request.execute()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper
return wrapped(*args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute
resp, content = _retry_request(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request
raise exception
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request
Traceback (most recent call last):
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/__init__.py", line 695, in snakemake
success = workflow.execute(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/workflow.py", line 1017, in execute
success = scheduler.schedule()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 489, in schedule
self.run(runjobs)
resp, content = http.request(uri, method, *args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 500, in run
executor.run_jobs(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/__init__.py", line 136, in run_jobs
self.run(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 806, in run
result = self._retry_request(operation)
resp, content = request(orig_request_method, uri, method, body,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request
raise ex
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request
return request.execute()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper
return wrapped(*args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute
resp, content = _retry_request(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request
raise exception
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request
resp, content = http.request(uri, method, *args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request
resp, content = request(orig_request_method, uri, method, body,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request
return http_callable(uri, method=method, body=body, headers=headers,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1708, in request
(response, content) = self._request(
return http_callable(uri, method=method, body=body, headers=headers,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1424, in _request
(response, content) = self._conn_request(conn, request_uri, method, body, headers)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1708, in request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1376, in _conn_request
response = conn.getresponse()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 1345, in getresponse
response.begin()
(response, content) = self._request(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 307, in begin
version, status, reason = self._read_status()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1424, in _request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 268, in _read_status
line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/socket.py", line 704, in readinto
return self._sock.recv_into(b)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1241, in recv_into
return self.read(nbytes, buffer)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1099, in read
return self._sslobj.read(len, buffer)
(response, content) = self._conn_request(conn, request_uri, method, body, headers)
ssl.SSLError: [SSL: DECRYPTION_FAILED_OR_BAD_RECORD_MAC] decryption failed or bad record mac (_ssl.c:2627)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1376, in _conn_request
```
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment