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May 14, 2021 06:23
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ssl error run 1
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| Output: | |
| ``` | |
| run at 2021-05-13 17:27:28.334900 | |
| run at 2021-05-13 17:27:30.287149 | |
| run at 2021-05-13 17:27:32.254218 | |
| run at 2021-05-13 17:27:34.109459 | |
| run at 2021-05-13 17:27:36.062005 | |
| wait at 2021-05-13 17:27:36.433094 | |
| wait at 2021-05-13 17:27:37.513581 | |
| run at 2021-05-13 17:27:37.880589 | |
| wait at 2021-05-13 17:27:38.607179 | |
| run at 2021-05-13 17:27:39.675230 | |
| wait at 2021-05-13 17:27:39.703162 | |
| ``` | |
| Error: | |
| ``` | |
| Exception in thread Thread-1: | |
| Traceback (most recent call last): | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 954, in _bootstrap_inner | |
| self.run() | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 892, in run | |
| self._target(*self._args, **self._kwargs) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 926, in _wait_for_jobs | |
| status = self._retry_request(request) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request | |
| raise ex | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request | |
| return request.execute() | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper | |
| return wrapped(*args, **kwargs) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute | |
| resp, content = _retry_request( | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request | |
| raise exception | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request | |
| Traceback (most recent call last): | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/__init__.py", line 695, in snakemake | |
| success = workflow.execute( | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/workflow.py", line 1017, in execute | |
| success = scheduler.schedule() | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 489, in schedule | |
| self.run(runjobs) | |
| resp, content = http.request(uri, method, *args, **kwargs) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 500, in run | |
| executor.run_jobs( | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/__init__.py", line 136, in run_jobs | |
| self.run( | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 806, in run | |
| result = self._retry_request(operation) | |
| resp, content = request(orig_request_method, uri, method, body, | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request | |
| raise ex | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request | |
| return request.execute() | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper | |
| return wrapped(*args, **kwargs) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute | |
| resp, content = _retry_request( | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request | |
| raise exception | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request | |
| resp, content = http.request(uri, method, *args, **kwargs) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request | |
| resp, content = request(orig_request_method, uri, method, body, | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request | |
| return http_callable(uri, method=method, body=body, headers=headers, | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1708, in request | |
| (response, content) = self._request( | |
| return http_callable(uri, method=method, body=body, headers=headers, | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1424, in _request | |
| (response, content) = self._conn_request(conn, request_uri, method, body, headers) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1708, in request | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1376, in _conn_request | |
| response = conn.getresponse() | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 1345, in getresponse | |
| response.begin() | |
| (response, content) = self._request( | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 307, in begin | |
| version, status, reason = self._read_status() | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1424, in _request | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 268, in _read_status | |
| line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1") | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/socket.py", line 704, in readinto | |
| return self._sock.recv_into(b) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1241, in recv_into | |
| return self.read(nbytes, buffer) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1099, in read | |
| return self._sslobj.read(len, buffer) | |
| (response, content) = self._conn_request(conn, request_uri, method, body, headers) | |
| ssl.SSLError: [SSL: DECRYPTION_FAILED_OR_BAD_RECORD_MAC] decryption failed or bad record mac (_ssl.c:2627) | |
| File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1376, in _conn_request | |
| ``` |
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