Skip to content

Instantly share code, notes, and snippets.

What would you like to do?
# Polyester ( simulates RNA-Seq reads
# Output is FASTA and sorted by input transcript ID
# Some tools don't like this e.g. Salmon, and want a more random order
# Here is a one-liner for shuffling the reads from sample 1 in output directory test.out
cat test.out/sample_01.fasta | paste - - | shuf | awk '{print $1"\n"$2}' > test.out/sample_01.shuf.fasta
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment