Last active
April 27, 2020 11:03
-
-
Save mwalzer/e12f02894ee7600ea79e5fa5b9c0f7df to your computer and use it in GitHub Desktop.
Exploring jsonpath with mzQC
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
N.b.: before pasting into tools like http://jsonpath.herokuapp.com/ or http://www.jsonquerytool.com/ remove excess , and ..., | |
... | |
"qualityMetrics": [ | |
{"cvRef": "ref_not_prefix", "accession": "QC:123", "name": "metric1", "value": 1},... | |
], | |
"controlledVocabularies": [ | |
{"ref": "ref_not_prefix", "name": "Proteomics Standards Initiative Quality Control Ontology", "uri": "https://github.com/HUPO-PSI/qcML-development/blob/master/cv/v0_1_0/qc-cv.obo", "version": "0.1.0"}, | |
{"ref": "MS", "name": "Proteomics Standards Initiative Mass Spectrometry Ontology", "uri": "https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo", "version": "4.1.7"} | |
] | |
... | |
$.qualityMetrics[?(@.accession=="QC:123")].value | |
-> | |
[ | |
1 | |
] | |
... | |
"qualityMetrics": [ | |
{"cvRef": "ref_not_prefix", "accession": "QC:123", "name": "metric1", "value": 1}, | |
{"cvRef": "also_ref", "accession": "QC:123", "name": "metric1", "value": 1.0001},... | |
], | |
"controlledVocabularies": [ | |
{"ref": "ref_not_prefix", "name": "Proteomics Standards Initiative Quality Control Ontology", "uri": "https://github.com/HUPO-PSI/qcML-development/blob/master/cv/v0_1_0/qc-cv.obo", "version": "0.1.0"}, | |
{"ref": "MS", "name": "Proteomics Standards Initiative Mass Spectrometry Ontology", "uri": "https://github.com/HUPO-PSI/psi-ms-CV/blob/master/psi-ms.obo", "version": "4.1.7"}, | |
{"ref": "also_ref", "name": "Proteomics Standards Initiative Quality Control Ontology", "uri": "https://github.com/HUPO-PSI/qcML-development/blob/master/cv/v0_1_0/qc-cv.obo", "version": "0.1.1"} | |
] | |
... | |
$.qualityMetrics[?(@.accession=="QC:123")].value | |
-> | |
[ | |
1, | |
1.0001 | |
] | |
target_ref = $.controlledVocabularies[?(@.uri=="https://github.com/HUPO-PSI/qcML-development/blob/master/cv/v0_1_0/qc-cv.obo"&&@.version=="0.1.1")].ref[0] // [also_ref] | |
$.qualityMetrics[?(@.accession=="QC:123"&&@.cvRef=="also_ref")].value | |
-> | |
[ | |
1.0001 | |
] |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment