Here, we describe details of a metabolomics mzQC JSON document used to describe a Studies' quality before and after batch correction methods are applied. For description of the general structure of mzQC, see the Single-Run Example of mzQC. Find the complete file at the bottom of this document or in the example folder. The mzQC file is made from the acquisions of GC-ToF-MS polar metabolite data of an Arabidopsis nucleotype-plasmotype diallel study as described in Improved batch correction in untargeted MS-based metabolomics.
"description": "This dataset is based on the analysis of polar extracts from a nucleotype-plasmotype combination study of Arabidopsis for 58 different genotypes. For details of the used plant material we refer to Flood (2015). Analysis of the polar, derivatized metabolites by GC-ToF-MS (Agilent 6890 GC coupled to a Leco Pegasus III MS) and processing of the data were done as described in Villaf