Michael Waskom mwaskom

## curriculum.md

      
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                hadley
                / curriculum.md
            
            
              Created
              September 27, 2013 20:24
            
              
                My first stab at a basic R programming curriculum. I think teaching just these topics without overall motivating examples would be extremely boring, but if you're a self-taught R user, this might be useful to help spot your gaps.
              
          
    Notes:


I've tried to break up in to separate pieces, but it's not always possible: e.g. knowledge of data structures and subsetting are tidy intertwined.


Level of Bloom's taxonomy listed in square brackets, e.g. http://bit.ly/15gqPEx. Few categories currently assess components higher in the taxonomy.


Programming R curriculum

Data structures


## warpinfo.rst

      
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                satra
                / warpinfo.rst
            
            
              Created
              July 21, 2011 00:50
            
              
                combining bbregister, fsl and ants to warp functional images
              
          
    ANTS : http://picsl.upenn.edu/ANTS/ c3d : http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Convert3D
export PATH=/software/ANTS-dev:$PATH

c3d_affine_tool -ref [A] -src [B] bbreg.mat -fsl2ras -oitk fsl2antsAffine.txt

WarpImageMultiTransform 3 [B] [C] -R [D] [A_Warp].nii.gz [A_Affine].txt fsl2antsAffine.txt