There have been some issues lately getting PySurfer set up and running. Here is how I recently got things set up on our server.
I am pretty sure that the anaconda build of mayavi is broken, but I have had success installing everything with pip (go figure). To demonstrate, I am going to install everything into a fresh conda enviornment.
conda create -n setup_pysurfer python=3.7 pip
| import numpy as np | |
| from numpy.fft import fft, ifft, fftshift | |
| from scipy.stats import norm, multivariate_normal | |
| from scipy.signal import convolve2d | |
| from scipy.ndimage import gaussian_filter | |
| from scipy.interpolate import NearestNDInterpolator | |
| import matplotlib.pyplot as plt | |
| import nibabel as nib | |
| from surfer import Brain | |
| from mayavi import mlab |
| from IPython.core.magic import Magics, magics_class, line_magic | |
| @magics_class | |
| class Imports(Magics): | |
| @line_magic | |
| def imports(self, opts): | |
| lines = [] |