Michael Waskom mwaskom
mwaskom
/ SDT_Tutorial.ipynb
Last active
June 11, 2024 15:48
Translation of Justin Gardner's Signal Detection Theory tutorial from MATLAB into Python
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mwaskom
/ diffusion_tutorial.ipynb
Created
March 23, 2016 18:02
Translation of Justin Gardner's drift diffusion tutorial from MATLAB into Python
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mwaskom
/ palmer_ddm.py
Created
March 22, 2016 04:22
Context-dependent proportional-rate diffusion model
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| from __future__ import division | |
| import numpy as np | |
| import pandas as pd | |
| from scipy import stats | |
| from scipy.optimize import minimize | |
| def ddm_pc(x, k, A, lam): | |
| """Bernouli likelihood given diffusion model parameters.""" | |
| return lam + (1 - 2 * lam) * (1 / (1 + np.exp(-2 * A * k * x))) |
mwaskom
/ better_color_wheel.ipynb
Last active
December 15, 2016 11:59
Better circular colormap using CIE Lch
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mwaskom
/ seaborn_dark_background.ipynb
Created
December 3, 2015 19:49
Use seaborn with a dark background, if you like that sort of thing.
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mwaskom
/ python_surface_normalization.ipynb
Created
November 11, 2015 20:54
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mwaskom
/ unpack_sticks.py
Last active
September 1, 2015 00:37
Organize data after downloading from nims
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| """Unpack nims data into the lyman directory structure. | |
| Should be run from the root data directory. | |
| """ | |
| from __future__ import print_function | |
| import os | |
| import sys | |
| import os.path as op | |
| import shutil | |
| from glob import glob |
mwaskom
/ grab_image_from_scanner.py
Last active
August 29, 2015 14:20
Retrieve an image from the current exam off the scanner DICOM server.
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| #! /usr/bin/env python | |
| """Retrieve an image from a specific series in the current exam.""" | |
| from __future__ import print_function | |
| import sys | |
| import argparse | |
| from dcmstack import DicomStack | |
| # Change this path to point to where the rtfmri code lives | |
| sys.path.insert(0, "/home/cniuser/git/rtfmri") | |
| from rtfmri import ScannerClient |
mwaskom
/ nicer_barplots.ipynb
Created
March 15, 2015 22:04
Three options to improve a plot with one numeric variable and two categorical variables.
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mwaskom
/ coordinate_surface_normalization.ipynb
Last active
August 29, 2015 14:16
Surface-based coordinate normalization
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