See openworm/PyOpenWorm #92

issue-92.py

import sys
import PyOpenWorm as P

if len(sys.argv) > 1:
    P.connect(conf={'rdf.source':'default'})
    P.loadData('../WormData.n3')
else:
    P.connect('default.conf')

def should_match(y, x):
    print y
    print " -> Should match {}".format(x)

ader = P.Neuron('ADER')
should_match(ader.receptors(), "set(['ACR-16', 'TYRA-3', 'DOP-2', 'EXP-1'])")

#look up what reference says this neuron has a receptor EXP-1
e = P.Evidence()
should_match(e.asserts(P.Neuron('ADER').receptor('EXP-1')), "asserts=receptor=EXP-1")
should_match(e.doi(), "'10.100.123/natneuro'")

print "Add provenance information::"

e = P.Evidence(author='Sulston et al.', date='1983')
should_match(e.asserts(P.Neuron(name="AVDL").lineageName("AB alaaapalr")), "asserts=lineageName=AB alaaapalr")
e.save()

print "See what some evidence stated::"
e0 = P.Evidence(author='Sulston et al.', date='1983')
should_match(list(e0.asserts()), "lineageName=")