Created
February 26, 2015 21:47
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A thing for doing graph queries
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import yarom as Y | |
import rdflib as R | |
from rdflib.tools.rdf2dot import rdf2dot | |
from pprint import pprint as PP | |
from time import time | |
from object_name_dict import onames as ONAMES | |
from object_name_dict import pnames as PNAMES | |
import sys | |
NOBJS = 10 | |
NTRIPS = 20 | |
SEED = None | |
def objects(count): | |
res = [] | |
for x in range(count): | |
res.append(Y.DataObject(key=ONAMES[x])) | |
return res | |
def query_objects(count): | |
res = [] | |
for x in range(count): | |
res.append(Y.DataObject(var=ONAMES[x])) | |
return res | |
def predicates(count): | |
res = [] | |
for x in range(count): | |
res.append(PNAMES[x]) | |
return res | |
def numbers(count, *maxes): | |
res = [] | |
from random import randint as RND | |
import random | |
global SEED | |
if SEED is not None: | |
random.seed(SEED) | |
else: | |
random.seed(23) | |
for z in range(count): | |
t = tuple(random.randint(0, m) for m in maxes) | |
res.append(t) | |
return res | |
def triples(count, objects, preds): | |
res = [] | |
max_object_index = len(objects) - 1 | |
max_pred_index = len(preds) - 1 | |
ns = numbers(count, max_object_index, max_object_index, max_pred_index) | |
for x,y,z in ns: | |
o1 = objects[x] | |
o2 = objects[y] | |
p = preds[z] | |
o1.set_parent(p, o2) | |
print(o1, p, o2) | |
res.append((o1.idl, p, o2.idl)) | |
return res | |
def pred_avg(graph, s, p): | |
res = dict() | |
for x in graph.triples((None, p, s)): | |
print(x) | |
res[x[2]] = res.get(x[2], 0) + 1 | |
return res | |
class L(object): | |
def __init__(self, start): | |
self.seen = [] | |
self.leaves = set() | |
self.start = start | |
def __call__(self, node=False): | |
if not node: | |
node = self.start | |
if node in self.seen: | |
return | |
else: | |
self.seen.append(node) | |
print(node, node.p, node.o) | |
if ((len(node.p) == 0 or len(node.o) == 0) and (node != self.start)): | |
self.leaves.add(node) | |
for x in node.o: | |
self(x.value) | |
for x in node.p: | |
self(x.owner) | |
self.seen.pop() | |
return self.leaves | |
def hoc(l): | |
res = dict() | |
for x in l: | |
if len(x) > 0: | |
tmp = res.get(x[0], []) | |
tmp.append(x[1:]) | |
res[x[0]] = tmp | |
for x in res: | |
res[x] = hoc(res[x]) | |
return res | |
def pr(h, i, d = False): | |
if not d: | |
d = dict() | |
for x in h: | |
if x not in d: | |
if len(d.keys()) == 0: | |
s = 0 | |
else: | |
s = max(d[z] for z in d) | |
d[x] = s + 1 | |
print(" "*4*i + str(x) + " " + str(d[x])) | |
pr(h[x], i+1, d) | |
else: | |
print(" "*4*i + str(d[x])) | |
def print_graph(g): | |
print(g.serialize(format="n3").decode("UTF-8")) | |
def render_graph_dot(g): | |
import tempfile | |
from subprocess import call | |
from os import fork | |
from sys import exit | |
with tempfile.TemporaryFile() as f: | |
rdf2dot(g, f) | |
f.seek(0, 0) # start of stream | |
g,gname = tempfile.mkstemp() | |
call("dot -T png -o "+gname, stdin = f, shell=True) | |
call("feh "+gname, shell = True) | |
def fixName(n): | |
if isinstance(n, R.URIRef): | |
return n[53:] | |
else: | |
return n | |
def qpr(g, h, toset=False, i=0): | |
def prl(*x): | |
print(" "*4*i+" ".join(map(str, x))) | |
prl(i) | |
join_args = [] | |
for x in h: | |
sub_answers = set() | |
sub = h[x] | |
idx = x.index(None) | |
if idx == 2: | |
other_idx = 0 | |
else: | |
other_idx = 2 | |
if isinstance(x[other_idx], R.Variable): | |
for z in qpr(g, sub, False, i+1): | |
if idx == 2: | |
qx = (z, x[1], None) | |
else: | |
qx = (None, x[1], z) | |
prl("QUERYING",tuple(fixName(y) for y in qx)) | |
for y in g.triples(qx): | |
prl("QUERY GOT", fixName(y[idx])) | |
sub_answers.add(y[idx]) | |
else: | |
prl("QUERYING",tuple(fixName(y) for y in x)) | |
for y in g.triples(x): | |
prl("QUERY GOT", fixName(y[idx])) | |
sub_answers.add(y[idx]) | |
join_args.append(sub_answers) | |
if len(join_args) > 0: | |
prl("Got", list(set(fixName(x) for x in y) for y in join_args)) | |
res = join_args[0] | |
for x in join_args[1:]: | |
res = res & x | |
return res | |
else: | |
return set() | |
#for x in h: | |
#idx = x.index(None) | |
#v = set() | |
#if toset: | |
#if idx == 2: | |
#qx = (toset, x[1], None) | |
#else: | |
#qx = (None, x[1], toset) | |
#else: | |
#qx = x | |
#prl("QUERY", tuple(map(fixName, qx))) | |
#for y in g.triples(qx): | |
#k = h[x] | |
#prl(y) | |
#if len(k) > 0: | |
#for z in qpr(g, k, y[idx], i+1): | |
#v.add(z) | |
#else: | |
#v.add(y[idx]) | |
#if join is None: | |
#prl("setting join", v) | |
#join = v | |
#else: | |
#prl(join, "&" , v) | |
#join = join & v | |
return join | |
def qq(): | |
qos = query_objects(NOBJS) | |
ps = predicates(10) | |
tr = triples(12, qos, ps) | |
g = boh() | |
leaves = L(qos[0])() | |
for x in leaves: | |
x.setKey(x.idl) | |
print("SET", [x for x in qos if x.defined]) | |
qu = Y.dataObject.QU() | |
print("QUERYING", qos[0]) | |
qu(qos[0]) | |
PP(list((tuple(fixName(t) for t in x[0]), tuple(fixName(t) for t in x[-1])) for x in qu.paths)) | |
h = hoc(qu.paths) | |
pr(h, 0) | |
for y in qpr(g, h): | |
print(y) | |
#render_graph_dot(g) | |
def boh(): | |
os = objects(NOBJS) | |
ps = predicates(10) | |
tripbase = triples(NTRIPS, os, ps) | |
print("GRAPH START", os[0]) | |
result = Y.dataObject.SV()(os[0]) | |
result.namespace_manager = Y.config("rdf.namespace_manager") | |
return result | |
def timed(f, *args): | |
t0 = time() | |
r = f(*args) | |
t1 = time() | |
print(f, "took", t1 - t0) | |
return r | |
if __name__ == "__main__": | |
Y.connect() | |
#A = Y.DataObject | |
#z = A(key="z") | |
#a = A(key="a") | |
#b = A(key="b") | |
#c = A(key="c") | |
#z.set_parent('saw_on_TV', a) | |
#c.set_parent('saw_on_TV', a) | |
#a.set_parent('voted_for', b) | |
#result = Y.dataObject.SV()(b) | |
#result.namespace_manager=Y.config("rdf.namespace_manager") | |
#print(result.serialize(format="n3").decode("UTF-8")) | |
#PP.pprint(Y.dataObject.QU()(z)) | |
if len(sys.argv) > 1: | |
SEED = int(sys.argv[1]) | |
print("NOBJS", NOBJS, "NTRIPS", NTRIPS) | |
timed(qq) | |
#print(s.getvalue()) |
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