Skip to content

Instantly share code, notes, and snippets.

@nachocab

nachocab/to_bam_pbmc_08_12.log

Created November 19, 2014 15:31
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save nachocab/b9f8ec14a0500946926a to your computer and use it in GitHub Desktop.
Save nachocab/b9f8ec14a0500946926a to your computer and use it in GitHub Desktop.
Download ZIP
Raw
to_bam_pbmc_08_12.log
Sender: LSF System <lsf@node1667>
Subject: Job 2941808: <to_bam_pbmc_08_12> Exited
Job <to_bam_pbmc_08_12> was submitted from host <tin> by user <icaballe> in cluster <cromwell>.
Job was executed on host(s) <node1667>, in queue <hour>, as user <icaballe> in cluster <cromwell>.
</home/unix/icaballe> was used as the home directory.
</idi/sabeti-data/nacho/ebola_pbmc2> was used as the working directory.
Started at Tue Nov 18 20:00:26 2014
Results reported at Tue Nov 18 21:48:17 2014
Your job looked like:
------------------------------------------------------------
# LSBATCH: User input
/idi/sabeti-data/nacho/ebola_pbmc2/misc/scripts/to_bam_pbmc_08_12
------------------------------------------------------------
Exited with exit code 1.
Resource usage summary:
CPU time : 11554.66 sec.
Max Memory : 3803 MB
Max Swap : 12916 MB
Max Processes : 4
Max Threads : 36
The output (if any) follows:
[Tue Nov 18 20:00:27 EST 2014] picard.illumina.IlluminaBasecallsToSam BASECALLS_DIR=/seq/illumina/proc/SL-HDD/141112_SL-HDD_0478_BHAV02ADXX/Data/Intensities/BaseCalls BARCODES_DIR=/idi/sabeti-data/nacho/ebola_pbmc2/calculations/demultiplex/pbmc_08_12 LANE=2 RUN_BARCODE=141112_SL-HDD_0478_BHAV02ADXX SEQUENCING_CENTER=Broad READ_STRUCTURE=101T8B101T LIBRARY_PARAMS=/idi/sabeti-data/nacho/ebola_pbmc2/misc/library_params.txt ADAPTERS_TO_CHECK=[INDEXED, DUAL_INDEXED, NEXTERA_V2, FLUIDIGM, PAIRED_END] NUM_PROCESSORS=4 FORCE_GC=false MAX_READS_IN_RAM_PER_TILE=100000 MAX_RECORDS_IN_RAM=100000 PLATFORM=illumina APPLY_EAMSS_FILTER=true MINIMUM_QUALITY=2 INCLUDE_NON_PF_READS=true VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 CREATE_INDEX=false CREATE_MD5_FILE=false
[Tue Nov 18 20:00:27 EST 2014] Executing as icaballe@node1667 on Linux 2.6.18-194.8.1.el5 amd64; OpenJDK 64-Bit Server VM 1.6.0_0-b16; Picard version: 1.776(286a232caea2fdc8fdd88574c09c460b46386fff_1413818736) IntelDeflater
INFO 2014-11-18 20:04:25 IlluminaBasecallsToSam DONE_READING STRUCTURE IS 101T8B101T
INFO 2014-11-18 20:05:08 IlluminaBasecallsConverter Read 1,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:05:17 IlluminaBasecallsConverter Read 2,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:05:24 IlluminaBasecallsConverter Read 3,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 6s. Last read position: */*
INFO 2014-11-18 20:05:33 IlluminaBasecallsConverter Read 4,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:05:39 IlluminaBasecallsConverter Read 5,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 6s. Last read position: */*
INFO 2014-11-18 20:05:48 IlluminaBasecallsConverter Read 6,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:05:55 IlluminaBasecallsConverter Read 7,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 7s. Last read position: */*
INFO 2014-11-18 20:06:03 IlluminaBasecallsConverter Read 8,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 7s. Last read position: */*
INFO 2014-11-18 20:06:12 IlluminaBasecallsConverter Read 9,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:06:19 IlluminaBasecallsConverter Read 10,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 7s. Last read position: */*
INFO 2014-11-18 20:06:26 IlluminaBasecallsConverter Read 11,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 7s. Last read position: */*
INFO 2014-11-18 20:06:34 IlluminaBasecallsConverter Read 12,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 7s. Last read position: */*
INFO 2014-11-18 20:06:53 IlluminaBasecallsConverter Write 1,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 16s. Last read position: */*
INFO 2014-11-18 20:07:08 IlluminaBasecallsConverter Read 13,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 20:07:08 IlluminaBasecallsConverter Write 2,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:07:22 IlluminaBasecallsConverter Read 14,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:07:26 IlluminaBasecallsConverter Write 3,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:07:35 IlluminaBasecallsConverter Read 15,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:07:41 IlluminaBasecallsConverter Write 4,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:07:49 IlluminaBasecallsConverter Read 16,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:07:58 IlluminaBasecallsConverter Read 17,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:08:09 IlluminaBasecallsConverter Read 18,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:08:13 IlluminaBasecallsConverter Write 5,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:08:18 IlluminaBasecallsConverter Read 19,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:08:32 IlluminaBasecallsConverter Read 20,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:08:33 IlluminaBasecallsConverter Write 6,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:08:50 IlluminaBasecallsConverter Write 7,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 17s. Last read position: */*
INFO 2014-11-18 20:08:52 IlluminaBasecallsConverter Read 21,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:09:05 IlluminaBasecallsConverter Read 22,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:09:17 IlluminaBasecallsConverter Write 8,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 26s. Last read position: */*
INFO 2014-11-18 20:09:19 IlluminaBasecallsConverter Read 23,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:09:33 IlluminaBasecallsConverter Write 9,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 16s. Last read position: */*
INFO 2014-11-18 20:09:34 IlluminaBasecallsConverter Read 24,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:09:47 IlluminaBasecallsConverter Read 25,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:09:59 IlluminaBasecallsConverter Read 26,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:10:06 IlluminaBasecallsConverter Write 10,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:10:07 IlluminaBasecallsConverter Read 27,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:10:17 IlluminaBasecallsConverter Read 28,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:10:26 IlluminaBasecallsConverter Write 11,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 20s. Last read position: */*
INFO 2014-11-18 20:10:31 IlluminaBasecallsConverter Read 29,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:10:44 IlluminaBasecallsConverter Read 30,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:10:47 IlluminaBasecallsConverter Write 12,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 21s. Last read position: */*
INFO 2014-11-18 20:11:02 IlluminaBasecallsConverter Read 31,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:11:08 IlluminaBasecallsConverter Write 13,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 20s. Last read position: */*
INFO 2014-11-18 20:11:15 IlluminaBasecallsConverter Read 32,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:11:27 IlluminaBasecallsConverter Read 33,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:11:33 IlluminaBasecallsConverter Write 14,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:11:41 IlluminaBasecallsConverter Read 34,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:11:54 IlluminaBasecallsConverter Write 15,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 21s. Last read position: */*
INFO 2014-11-18 20:11:55 IlluminaBasecallsConverter Read 35,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:12:06 IlluminaBasecallsConverter Read 36,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:12:16 IlluminaBasecallsConverter Read 37,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:12:25 IlluminaBasecallsConverter Write 16,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 20:12:28 IlluminaBasecallsConverter Read 38,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:12:41 IlluminaBasecallsConverter Read 39,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:12:45 IlluminaBasecallsConverter Write 17,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:12:57 IlluminaBasecallsConverter Read 40,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 16s. Last read position: */*
INFO 2014-11-18 20:13:03 IlluminaBasecallsConverter Write 18,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:13:11 IlluminaBasecallsConverter Read 41,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:13:24 IlluminaBasecallsConverter Read 42,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:13:31 IlluminaBasecallsConverter Write 19,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:13:34 IlluminaBasecallsConverter Read 43,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:13:49 IlluminaBasecallsConverter Read 44,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:13:50 IlluminaBasecallsConverter Write 20,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:14:02 IlluminaBasecallsConverter Read 45,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:14:14 IlluminaBasecallsConverter Read 46,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:14:19 IlluminaBasecallsConverter Write 21,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:14:23 IlluminaBasecallsConverter Read 47,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:14:33 IlluminaBasecallsConverter Read 48,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:14:41 IlluminaBasecallsConverter Write 22,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 21s. Last read position: */*
INFO 2014-11-18 20:14:46 IlluminaBasecallsConverter Read 49,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:14:59 IlluminaBasecallsConverter Read 50,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:15:04 IlluminaBasecallsConverter Write 23,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 23s. Last read position: */*
INFO 2014-11-18 20:15:17 IlluminaBasecallsConverter Read 51,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 17s. Last read position: */*
INFO 2014-11-18 20:15:23 IlluminaBasecallsConverter Write 24,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:15:30 IlluminaBasecallsConverter Read 52,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:15:43 IlluminaBasecallsConverter Read 53,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:15:52 IlluminaBasecallsConverter Write 25,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 20:15:54 IlluminaBasecallsConverter Read 54,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:16:08 IlluminaBasecallsConverter Read 55,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:16:12 IlluminaBasecallsConverter Write 26,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:16:21 IlluminaBasecallsConverter Read 56,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:16:33 IlluminaBasecallsConverter Read 57,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:16:36 IlluminaBasecallsConverter Write 27,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 23s. Last read position: */*
INFO 2014-11-18 20:16:47 IlluminaBasecallsConverter Read 58,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:17:00 IlluminaBasecallsConverter Write 28,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 23s. Last read position: */*
INFO 2014-11-18 20:17:02 IlluminaBasecallsConverter Read 59,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:17:16 IlluminaBasecallsConverter Write 29,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:17:17 IlluminaBasecallsConverter Read 60,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:17:30 IlluminaBasecallsConverter Read 61,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:17:41 IlluminaBasecallsConverter Read 62,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:17:48 IlluminaBasecallsConverter Write 30,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:17:52 IlluminaBasecallsConverter Read 63,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:18:05 IlluminaBasecallsConverter Read 64,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:18:06 IlluminaBasecallsConverter Write 31,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 17s. Last read position: */*
INFO 2014-11-18 20:18:18 IlluminaBasecallsConverter Read 65,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:18:28 IlluminaBasecallsConverter Read 66,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:18:35 IlluminaBasecallsConverter Write 32,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 20:18:42 IlluminaBasecallsConverter Read 67,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:18:54 IlluminaBasecallsConverter Write 33,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:18:55 IlluminaBasecallsConverter Read 68,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:19:14 IlluminaBasecallsConverter Read 69,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:19:14 IlluminaBasecallsConverter Write 34,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 20s. Last read position: */*
INFO 2014-11-18 20:19:27 IlluminaBasecallsConverter Read 70,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:19:39 IlluminaBasecallsConverter Read 71,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:19:48 IlluminaBasecallsConverter Write 35,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 20:19:52 IlluminaBasecallsConverter Read 72,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:20:05 IlluminaBasecallsConverter Read 73,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:20:06 IlluminaBasecallsConverter Write 36,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:20:18 IlluminaBasecallsConverter Read 74,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:20:29 IlluminaBasecallsConverter Read 75,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:20:39 IlluminaBasecallsConverter Write 37,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:20:42 IlluminaBasecallsConverter Read 76,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:20:56 IlluminaBasecallsConverter Read 77,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:21:07 IlluminaBasecallsConverter Write 38,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:21:12 IlluminaBasecallsConverter Read 78,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:21:27 IlluminaBasecallsConverter Write 39,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:21:28 IlluminaBasecallsConverter Read 79,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:21:44 IlluminaBasecallsConverter Read 80,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:21:53 IlluminaBasecallsConverter Read 81,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:22:02 IlluminaBasecallsConverter Write 40,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 20:22:06 IlluminaBasecallsConverter Read 82,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:22:19 IlluminaBasecallsConverter Read 83,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:22:22 IlluminaBasecallsConverter Write 41,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 20s. Last read position: */*
INFO 2014-11-18 20:22:34 IlluminaBasecallsConverter Read 84,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:22:44 IlluminaBasecallsConverter Read 85,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:22:51 IlluminaBasecallsConverter Write 42,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:22:57 IlluminaBasecallsConverter Read 86,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:23:11 IlluminaBasecallsConverter Read 87,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:23:19 IlluminaBasecallsConverter Write 43,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:23:26 IlluminaBasecallsConverter Read 88,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:23:39 IlluminaBasecallsConverter Read 89,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:23:50 IlluminaBasecallsConverter Write 44,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 20:23:51 IlluminaBasecallsConverter Read 90,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:24:00 IlluminaBasecallsConverter Read 91,000,000 records. Elapsed time: 00:23:33s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:24:11 IlluminaBasecallsConverter Read 92,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:24:17 IlluminaBasecallsConverter Write 45,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:24:24 IlluminaBasecallsConverter Read 93,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:24:38 IlluminaBasecallsConverter Read 94,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:24:51 IlluminaBasecallsConverter Write 46,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 20:24:52 IlluminaBasecallsConverter Read 95,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:25:05 IlluminaBasecallsConverter Read 96,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:25:19 IlluminaBasecallsConverter Read 97,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:25:21 IlluminaBasecallsConverter Write 47,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 20:25:32 IlluminaBasecallsConverter Read 98,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:25:46 IlluminaBasecallsConverter Read 99,000,000 records. Elapsed time: 00:25:18s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:25:47 IlluminaBasecallsConverter Write 48,000,000 records. Elapsed time: 00:25:20s. Time for last 1,000,000: 26s. Last read position: */*
INFO 2014-11-18 20:25:58 IlluminaBasecallsConverter Read 100,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:26:07 IlluminaBasecallsConverter Read 101,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:26:18 IlluminaBasecallsConverter Read 102,000,000 records. Elapsed time: 00:25:50s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:26:20 IlluminaBasecallsConverter Write 49,000,000 records. Elapsed time: 00:25:53s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:26:31 IlluminaBasecallsConverter Read 103,000,000 records. Elapsed time: 00:26:03s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:26:44 IlluminaBasecallsConverter Read 104,000,000 records. Elapsed time: 00:26:16s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:26:45 IlluminaBasecallsConverter Write 50,000,000 records. Elapsed time: 00:26:18s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:26:58 IlluminaBasecallsConverter Read 105,000,000 records. Elapsed time: 00:26:31s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:27:01 IlluminaBasecallsConverter Write 51,000,000 records. Elapsed time: 00:26:33s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:27:11 IlluminaBasecallsConverter Read 106,000,000 records. Elapsed time: 00:26:44s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:27:25 IlluminaBasecallsConverter Write 52,000,000 records. Elapsed time: 00:26:57s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:27:26 IlluminaBasecallsConverter Read 107,000,000 records. Elapsed time: 00:26:59s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:27:40 IlluminaBasecallsConverter Read 108,000,000 records. Elapsed time: 00:27:13s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:27:53 IlluminaBasecallsConverter Write 53,000,000 records. Elapsed time: 00:27:26s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:27:54 IlluminaBasecallsConverter Read 109,000,000 records. Elapsed time: 00:27:27s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:28:03 IlluminaBasecallsConverter Read 110,000,000 records. Elapsed time: 00:27:36s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:28:12 IlluminaBasecallsConverter Read 111,000,000 records. Elapsed time: 00:27:44s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:28:21 IlluminaBasecallsConverter Write 54,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:28:25 IlluminaBasecallsConverter Read 112,000,000 records. Elapsed time: 00:27:58s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:28:38 IlluminaBasecallsConverter Read 113,000,000 records. Elapsed time: 00:28:11s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:28:48 IlluminaBasecallsConverter Write 55,000,000 records. Elapsed time: 00:28:21s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:28:53 IlluminaBasecallsConverter Read 114,000,000 records. Elapsed time: 00:28:26s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:29:06 IlluminaBasecallsConverter Read 115,000,000 records. Elapsed time: 00:28:39s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:29:18 IlluminaBasecallsConverter Write 56,000,000 records. Elapsed time: 00:28:51s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 20:29:20 IlluminaBasecallsConverter Read 116,000,000 records. Elapsed time: 00:28:53s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:29:34 IlluminaBasecallsConverter Read 117,000,000 records. Elapsed time: 00:29:07s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:29:40 IlluminaBasecallsConverter Write 57,000,000 records. Elapsed time: 00:29:13s. Time for last 1,000,000: 22s. Last read position: */*
INFO 2014-11-18 20:29:47 IlluminaBasecallsConverter Read 118,000,000 records. Elapsed time: 00:29:20s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:29:58 IlluminaBasecallsConverter Read 119,000,000 records. Elapsed time: 00:29:31s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:30:07 IlluminaBasecallsConverter Read 120,000,000 records. Elapsed time: 00:29:40s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:30:17 IlluminaBasecallsConverter Write 58,000,000 records. Elapsed time: 00:29:49s. Time for last 1,000,000: 36s. Last read position: */*
INFO 2014-11-18 20:30:18 IlluminaBasecallsConverter Read 121,000,000 records. Elapsed time: 00:29:51s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:30:31 IlluminaBasecallsConverter Read 122,000,000 records. Elapsed time: 00:30:03s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:30:45 IlluminaBasecallsConverter Read 123,000,000 records. Elapsed time: 00:30:18s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:30:47 IlluminaBasecallsConverter Write 59,000,000 records. Elapsed time: 00:30:20s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 20:30:59 IlluminaBasecallsConverter Read 124,000,000 records. Elapsed time: 00:30:31s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:31:11 IlluminaBasecallsConverter Write 60,000,000 records. Elapsed time: 00:30:44s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:31:12 IlluminaBasecallsConverter Read 125,000,000 records. Elapsed time: 00:30:45s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:31:26 IlluminaBasecallsConverter Read 126,000,000 records. Elapsed time: 00:30:59s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:31:34 IlluminaBasecallsConverter Write 61,000,000 records. Elapsed time: 00:31:07s. Time for last 1,000,000: 22s. Last read position: */*
INFO 2014-11-18 20:31:40 IlluminaBasecallsConverter Read 127,000,000 records. Elapsed time: 00:31:12s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:31:53 IlluminaBasecallsConverter Read 128,000,000 records. Elapsed time: 00:31:26s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:32:02 IlluminaBasecallsConverter Read 129,000,000 records. Elapsed time: 00:31:35s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:32:11 IlluminaBasecallsConverter Read 130,000,000 records. Elapsed time: 00:31:44s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:32:12 IlluminaBasecallsConverter Write 62,000,000 records. Elapsed time: 00:31:45s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 20:32:24 IlluminaBasecallsConverter Read 131,000,000 records. Elapsed time: 00:31:57s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:32:31 IlluminaBasecallsConverter Write 63,000,000 records. Elapsed time: 00:32:03s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:32:37 IlluminaBasecallsConverter Read 132,000,000 records. Elapsed time: 00:32:10s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:32:50 IlluminaBasecallsConverter Read 133,000,000 records. Elapsed time: 00:32:22s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:32:54 IlluminaBasecallsConverter Write 64,000,000 records. Elapsed time: 00:32:27s. Time for last 1,000,000: 23s. Last read position: */*
INFO 2014-11-18 20:33:03 IlluminaBasecallsConverter Read 134,000,000 records. Elapsed time: 00:32:36s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:33:17 IlluminaBasecallsConverter Read 135,000,000 records. Elapsed time: 00:32:50s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:33:17 IlluminaBasecallsConverter Write 65,000,000 records. Elapsed time: 00:32:50s. Time for last 1,000,000: 22s. Last read position: */*
INFO 2014-11-18 20:33:30 IlluminaBasecallsConverter Read 136,000,000 records. Elapsed time: 00:33:03s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:33:36 IlluminaBasecallsConverter Write 66,000,000 records. Elapsed time: 00:33:09s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:33:44 IlluminaBasecallsConverter Read 137,000,000 records. Elapsed time: 00:33:17s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:33:57 IlluminaBasecallsConverter Read 138,000,000 records. Elapsed time: 00:33:30s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:34:07 IlluminaBasecallsConverter Read 139,000,000 records. Elapsed time: 00:33:40s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:34:14 IlluminaBasecallsConverter Write 67,000,000 records. Elapsed time: 00:33:46s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 20:34:17 IlluminaBasecallsConverter Read 140,000,000 records. Elapsed time: 00:33:49s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:34:30 IlluminaBasecallsConverter Read 141,000,000 records. Elapsed time: 00:34:02s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:34:32 IlluminaBasecallsConverter Write 68,000,000 records. Elapsed time: 00:34:05s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:34:42 IlluminaBasecallsConverter Read 142,000,000 records. Elapsed time: 00:34:15s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:34:55 IlluminaBasecallsConverter Read 143,000,000 records. Elapsed time: 00:34:27s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:34:57 IlluminaBasecallsConverter Write 69,000,000 records. Elapsed time: 00:34:30s. Time for last 1,000,000: 25s. Last read position: */*
INFO 2014-11-18 20:35:08 IlluminaBasecallsConverter Read 144,000,000 records. Elapsed time: 00:34:40s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:35:21 IlluminaBasecallsConverter Read 145,000,000 records. Elapsed time: 00:34:53s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:35:29 IlluminaBasecallsConverter Write 70,000,000 records. Elapsed time: 00:35:02s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:35:35 IlluminaBasecallsConverter Read 146,000,000 records. Elapsed time: 00:35:08s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:35:48 IlluminaBasecallsConverter Write 71,000,000 records. Elapsed time: 00:35:21s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:35:50 IlluminaBasecallsConverter Read 147,000,000 records. Elapsed time: 00:35:22s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:36:03 IlluminaBasecallsConverter Read 148,000,000 records. Elapsed time: 00:35:36s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:36:13 IlluminaBasecallsConverter Read 149,000,000 records. Elapsed time: 00:35:46s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:36:21 IlluminaBasecallsConverter Write 72,000,000 records. Elapsed time: 00:35:54s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 20:36:23 IlluminaBasecallsConverter Read 150,000,000 records. Elapsed time: 00:35:56s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:36:36 IlluminaBasecallsConverter Write 73,000,000 records. Elapsed time: 00:36:09s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:36:36 IlluminaBasecallsConverter Read 151,000,000 records. Elapsed time: 00:36:09s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:36:50 IlluminaBasecallsConverter Read 152,000,000 records. Elapsed time: 00:36:23s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:37:01 IlluminaBasecallsConverter Read 153,000,000 records. Elapsed time: 00:36:34s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:37:12 IlluminaBasecallsConverter Write 74,000,000 records. Elapsed time: 00:36:44s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 20:37:12 IlluminaBasecallsConverter Read 154,000,000 records. Elapsed time: 00:36:45s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:37:25 IlluminaBasecallsConverter Read 155,000,000 records. Elapsed time: 00:36:58s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:37:34 IlluminaBasecallsConverter Write 75,000,000 records. Elapsed time: 00:37:06s. Time for last 1,000,000: 21s. Last read position: */*
INFO 2014-11-18 20:37:38 IlluminaBasecallsConverter Read 156,000,000 records. Elapsed time: 00:37:11s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:37:52 IlluminaBasecallsConverter Write 76,000,000 records. Elapsed time: 00:37:24s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:37:53 IlluminaBasecallsConverter Read 157,000,000 records. Elapsed time: 00:37:26s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:38:06 IlluminaBasecallsConverter Read 158,000,000 records. Elapsed time: 00:37:39s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:38:18 IlluminaBasecallsConverter Read 159,000,000 records. Elapsed time: 00:37:51s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:38:20 IlluminaBasecallsConverter Write 77,000,000 records. Elapsed time: 00:37:53s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:38:32 IlluminaBasecallsConverter Read 160,000,000 records. Elapsed time: 00:38:05s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:38:45 IlluminaBasecallsConverter Write 78,000,000 records. Elapsed time: 00:38:18s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:38:46 IlluminaBasecallsConverter Read 161,000,000 records. Elapsed time: 00:38:19s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:38:58 IlluminaBasecallsConverter Read 162,000,000 records. Elapsed time: 00:38:30s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:39:07 IlluminaBasecallsConverter Read 163,000,000 records. Elapsed time: 00:38:40s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:39:13 IlluminaBasecallsConverter Write 79,000,000 records. Elapsed time: 00:38:45s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:39:20 IlluminaBasecallsConverter Read 164,000,000 records. Elapsed time: 00:38:53s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:39:33 IlluminaBasecallsConverter Write 80,000,000 records. Elapsed time: 00:39:06s. Time for last 1,000,000: 20s. Last read position: */*
INFO 2014-11-18 20:39:33 IlluminaBasecallsConverter Read 165,000,000 records. Elapsed time: 00:39:06s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:39:50 IlluminaBasecallsConverter Read 166,000,000 records. Elapsed time: 00:39:22s. Time for last 1,000,000: 16s. Last read position: */*
INFO 2014-11-18 20:39:52 IlluminaBasecallsConverter Write 81,000,000 records. Elapsed time: 00:39:24s. Time for last 1,000,000: 18s. Last read position: */*
INFO 2014-11-18 20:40:03 IlluminaBasecallsConverter Read 167,000,000 records. Elapsed time: 00:39:35s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:40:14 IlluminaBasecallsConverter Read 168,000,000 records. Elapsed time: 00:39:47s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:40:24 IlluminaBasecallsConverter Write 82,000,000 records. Elapsed time: 00:39:56s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:40:26 IlluminaBasecallsConverter Read 169,000,000 records. Elapsed time: 00:39:59s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:40:40 IlluminaBasecallsConverter Read 170,000,000 records. Elapsed time: 00:40:13s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:40:43 IlluminaBasecallsConverter Write 83,000,000 records. Elapsed time: 00:40:16s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:40:53 IlluminaBasecallsConverter Read 171,000,000 records. Elapsed time: 00:40:26s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:41:02 IlluminaBasecallsConverter Read 172,000,000 records. Elapsed time: 00:40:34s. Time for last 1,000,000: 8s. Last read position: */*
INFO 2014-11-18 20:41:12 IlluminaBasecallsConverter Write 84,000,000 records. Elapsed time: 00:40:44s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:41:14 IlluminaBasecallsConverter Read 173,000,000 records. Elapsed time: 00:40:47s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:41:27 IlluminaBasecallsConverter Read 174,000,000 records. Elapsed time: 00:41:00s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:41:39 IlluminaBasecallsConverter Write 85,000,000 records. Elapsed time: 00:41:12s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:41:42 IlluminaBasecallsConverter Read 175,000,000 records. Elapsed time: 00:41:14s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:41:55 IlluminaBasecallsConverter Read 176,000,000 records. Elapsed time: 00:41:28s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:41:59 IlluminaBasecallsConverter Write 86,000,000 records. Elapsed time: 00:41:32s. Time for last 1,000,000: 20s. Last read position: */*
INFO 2014-11-18 20:42:09 IlluminaBasecallsConverter Read 177,000,000 records. Elapsed time: 00:41:42s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:42:18 IlluminaBasecallsConverter Read 178,000,000 records. Elapsed time: 00:41:51s. Time for last 1,000,000: 9s. Last read position: */*
INFO 2014-11-18 20:42:26 IlluminaBasecallsConverter Write 87,000,000 records. Elapsed time: 00:41:59s. Time for last 1,000,000: 26s. Last read position: */*
INFO 2014-11-18 20:42:31 IlluminaBasecallsConverter Read 179,000,000 records. Elapsed time: 00:42:04s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:42:44 IlluminaBasecallsConverter Read 180,000,000 records. Elapsed time: 00:42:17s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:42:54 IlluminaBasecallsConverter Write 88,000,000 records. Elapsed time: 00:42:26s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:42:58 IlluminaBasecallsConverter Read 181,000,000 records. Elapsed time: 00:42:31s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:43:09 IlluminaBasecallsConverter Read 182,000,000 records. Elapsed time: 00:42:41s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:43:20 IlluminaBasecallsConverter Write 89,000,000 records. Elapsed time: 00:42:53s. Time for last 1,000,000: 26s. Last read position: */*
INFO 2014-11-18 20:43:21 IlluminaBasecallsConverter Read 183,000,000 records. Elapsed time: 00:42:54s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:43:34 IlluminaBasecallsConverter Read 184,000,000 records. Elapsed time: 00:43:07s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:43:45 IlluminaBasecallsConverter Write 90,000,000 records. Elapsed time: 00:43:18s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:43:48 IlluminaBasecallsConverter Read 185,000,000 records. Elapsed time: 00:43:21s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:44:02 IlluminaBasecallsConverter Read 186,000,000 records. Elapsed time: 00:43:35s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:44:11 IlluminaBasecallsConverter Write 91,000,000 records. Elapsed time: 00:43:43s. Time for last 1,000,000: 25s. Last read position: */*
INFO 2014-11-18 20:44:14 IlluminaBasecallsConverter Read 187,000,000 records. Elapsed time: 00:43:47s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:44:25 IlluminaBasecallsConverter Read 188,000,000 records. Elapsed time: 00:43:58s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:44:34 IlluminaBasecallsConverter Write 92,000,000 records. Elapsed time: 00:44:06s. Time for last 1,000,000: 22s. Last read position: */*
INFO 2014-11-18 20:44:38 IlluminaBasecallsConverter Read 189,000,000 records. Elapsed time: 00:44:11s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:44:51 IlluminaBasecallsConverter Read 190,000,000 records. Elapsed time: 00:44:24s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:45:03 IlluminaBasecallsConverter Read 191,000,000 records. Elapsed time: 00:44:36s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:45:09 IlluminaBasecallsConverter Write 93,000,000 records. Elapsed time: 00:44:41s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 20:45:15 IlluminaBasecallsConverter Read 192,000,000 records. Elapsed time: 00:44:47s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:45:24 IlluminaBasecallsConverter Write 94,000,000 records. Elapsed time: 00:44:57s. Time for last 1,000,000: 15s. Last read position: */*
INFO 2014-11-18 20:45:28 IlluminaBasecallsConverter Read 193,000,000 records. Elapsed time: 00:45:01s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:45:40 IlluminaBasecallsConverter Read 194,000,000 records. Elapsed time: 00:45:13s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:45:49 IlluminaBasecallsConverter Write 95,000,000 records. Elapsed time: 00:45:22s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:45:55 IlluminaBasecallsConverter Read 195,000,000 records. Elapsed time: 00:45:27s. Time for last 1,000,000: 14s. Last read position: */*
INFO 2014-11-18 20:46:08 IlluminaBasecallsConverter Read 196,000,000 records. Elapsed time: 00:45:41s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:46:13 IlluminaBasecallsConverter Write 96,000,000 records. Elapsed time: 00:45:46s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:46:21 IlluminaBasecallsConverter Read 197,000,000 records. Elapsed time: 00:45:53s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:46:31 IlluminaBasecallsConverter Read 198,000,000 records. Elapsed time: 00:46:04s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:46:42 IlluminaBasecallsConverter Write 97,000,000 records. Elapsed time: 00:46:15s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:46:43 IlluminaBasecallsConverter Read 199,000,000 records. Elapsed time: 00:46:16s. Time for last 1,000,000: 11s. Last read position: */*
INFO 2014-11-18 20:46:57 IlluminaBasecallsConverter Read 200,000,000 records. Elapsed time: 00:46:30s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:47:09 IlluminaBasecallsConverter Read 201,000,000 records. Elapsed time: 00:46:42s. Time for last 1,000,000: 12s. Last read position: */*
INFO 2014-11-18 20:47:11 IlluminaBasecallsConverter Write 98,000,000 records. Elapsed time: 00:46:44s. Time for last 1,000,000: 28s. Last read position: */*
INFO 2014-11-18 20:47:19 IlluminaBasecallsConverter Read 202,000,000 records. Elapsed time: 00:46:52s. Time for last 1,000,000: 10s. Last read position: */*
INFO 2014-11-18 20:47:31 IlluminaBasecallsConverter Write 99,000,000 records. Elapsed time: 00:47:03s. Time for last 1,000,000: 19s. Last read position: */*
INFO 2014-11-18 20:47:33 IlluminaBasecallsConverter Read 203,000,000 records. Elapsed time: 00:47:06s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:47:46 IlluminaBasecallsConverter Read 204,000,000 records. Elapsed time: 00:47:19s. Time for last 1,000,000: 13s. Last read position: */*
INFO 2014-11-18 20:47:58 IlluminaBasecallsConverter Write 100,000,000 records. Elapsed time: 00:47:31s. Time for last 1,000,000: 27s. Last read position: */*
INFO 2014-11-18 20:48:09 IlluminaBasecallsConverter Read 205,000,000 records. Elapsed time: 00:47:42s. Time for last 1,000,000: 22s. Last read position: */*
INFO 2014-11-18 20:48:30 IlluminaBasecallsConverter Write 101,000,000 records. Elapsed time: 00:48:03s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:48:34 IlluminaBasecallsConverter Read 206,000,000 records. Elapsed time: 00:48:07s. Time for last 1,000,000: 25s. Last read position: */*
INFO 2014-11-18 20:48:53 IlluminaBasecallsConverter Write 102,000,000 records. Elapsed time: 00:48:25s. Time for last 1,000,000: 22s. Last read position: */*
INFO 2014-11-18 20:49:17 IlluminaBasecallsConverter Write 103,000,000 records. Elapsed time: 00:48:50s. Time for last 1,000,000: 24s. Last read position: */*
INFO 2014-11-18 20:49:55 IlluminaBasecallsConverter Write 104,000,000 records. Elapsed time: 00:49:28s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 20:50:28 IlluminaBasecallsConverter Write 105,000,000 records. Elapsed time: 00:50:00s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:50:59 IlluminaBasecallsConverter Write 106,000,000 records. Elapsed time: 00:50:32s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:51:36 IlluminaBasecallsConverter Write 107,000,000 records. Elapsed time: 00:51:09s. Time for last 1,000,000: 36s. Last read position: */*
INFO 2014-11-18 20:52:07 IlluminaBasecallsConverter Write 108,000,000 records. Elapsed time: 00:51:39s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 20:52:39 IlluminaBasecallsConverter Write 109,000,000 records. Elapsed time: 00:52:11s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:53:16 IlluminaBasecallsConverter Write 110,000,000 records. Elapsed time: 00:52:49s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 20:53:48 IlluminaBasecallsConverter Write 111,000,000 records. Elapsed time: 00:53:21s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:54:26 IlluminaBasecallsConverter Write 112,000,000 records. Elapsed time: 00:53:59s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 20:54:58 IlluminaBasecallsConverter Write 113,000,000 records. Elapsed time: 00:54:31s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 20:55:27 IlluminaBasecallsConverter Write 114,000,000 records. Elapsed time: 00:55:00s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 20:56:05 IlluminaBasecallsConverter Write 115,000,000 records. Elapsed time: 00:55:38s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 20:56:36 IlluminaBasecallsConverter Write 116,000,000 records. Elapsed time: 00:56:09s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:57:08 IlluminaBasecallsConverter Write 117,000,000 records. Elapsed time: 00:56:41s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:57:46 IlluminaBasecallsConverter Write 118,000,000 records. Elapsed time: 00:57:19s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 20:58:19 IlluminaBasecallsConverter Write 119,000,000 records. Elapsed time: 00:57:52s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 20:58:51 IlluminaBasecallsConverter Write 120,000,000 records. Elapsed time: 00:58:24s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 20:59:28 IlluminaBasecallsConverter Write 121,000,000 records. Elapsed time: 00:59:01s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 20:59:58 IlluminaBasecallsConverter Write 122,000,000 records. Elapsed time: 00:59:30s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 21:00:34 IlluminaBasecallsConverter Write 123,000,000 records. Elapsed time: 01:00:07s. Time for last 1,000,000: 36s. Last read position: */*
INFO 2014-11-18 21:01:06 IlluminaBasecallsConverter Write 124,000,000 records. Elapsed time: 01:00:39s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:01:37 IlluminaBasecallsConverter Write 125,000,000 records. Elapsed time: 01:01:10s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:02:15 IlluminaBasecallsConverter Write 126,000,000 records. Elapsed time: 01:01:47s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:02:47 IlluminaBasecallsConverter Write 127,000,000 records. Elapsed time: 01:02:20s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:03:24 IlluminaBasecallsConverter Write 128,000,000 records. Elapsed time: 01:02:57s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:03:56 IlluminaBasecallsConverter Write 129,000,000 records. Elapsed time: 01:03:29s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:04:25 IlluminaBasecallsConverter Write 130,000,000 records. Elapsed time: 01:03:58s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 21:05:03 IlluminaBasecallsConverter Write 131,000,000 records. Elapsed time: 01:04:36s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:05:34 IlluminaBasecallsConverter Write 132,000,000 records. Elapsed time: 01:05:07s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:06:11 IlluminaBasecallsConverter Write 133,000,000 records. Elapsed time: 01:05:44s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:06:43 IlluminaBasecallsConverter Write 134,000,000 records. Elapsed time: 01:06:16s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:07:15 IlluminaBasecallsConverter Write 135,000,000 records. Elapsed time: 01:06:48s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:07:53 IlluminaBasecallsConverter Write 136,000,000 records. Elapsed time: 01:07:26s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:08:25 IlluminaBasecallsConverter Write 137,000,000 records. Elapsed time: 01:07:58s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:08:57 IlluminaBasecallsConverter Write 138,000,000 records. Elapsed time: 01:08:30s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:09:36 IlluminaBasecallsConverter Write 139,000,000 records. Elapsed time: 01:09:08s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:10:07 IlluminaBasecallsConverter Write 140,000,000 records. Elapsed time: 01:09:40s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:10:45 IlluminaBasecallsConverter Write 141,000,000 records. Elapsed time: 01:10:18s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:11:17 IlluminaBasecallsConverter Write 142,000,000 records. Elapsed time: 01:10:50s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:11:49 IlluminaBasecallsConverter Write 143,000,000 records. Elapsed time: 01:11:21s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:12:26 IlluminaBasecallsConverter Write 144,000,000 records. Elapsed time: 01:11:59s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:12:56 IlluminaBasecallsConverter Write 145,000,000 records. Elapsed time: 01:12:28s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 21:13:27 IlluminaBasecallsConverter Write 146,000,000 records. Elapsed time: 01:13:00s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:14:05 IlluminaBasecallsConverter Write 147,000,000 records. Elapsed time: 01:13:38s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:14:37 IlluminaBasecallsConverter Write 148,000,000 records. Elapsed time: 01:14:09s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:15:09 IlluminaBasecallsConverter Write 149,000,000 records. Elapsed time: 01:14:42s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:15:53 IlluminaBasecallsConverter Write 150,000,000 records. Elapsed time: 01:15:25s. Time for last 1,000,000: 43s. Last read position: */*
INFO 2014-11-18 21:16:24 IlluminaBasecallsConverter Write 151,000,000 records. Elapsed time: 01:15:57s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:17:03 IlluminaBasecallsConverter Write 152,000,000 records. Elapsed time: 01:16:36s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:17:36 IlluminaBasecallsConverter Write 153,000,000 records. Elapsed time: 01:17:09s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 21:18:09 IlluminaBasecallsConverter Write 154,000,000 records. Elapsed time: 01:17:41s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:18:48 IlluminaBasecallsConverter Write 155,000,000 records. Elapsed time: 01:18:20s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:19:21 IlluminaBasecallsConverter Write 156,000,000 records. Elapsed time: 01:18:53s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:19:53 IlluminaBasecallsConverter Write 157,000,000 records. Elapsed time: 01:19:25s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:20:31 IlluminaBasecallsConverter Write 158,000,000 records. Elapsed time: 01:20:04s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:21:03 IlluminaBasecallsConverter Write 159,000,000 records. Elapsed time: 01:20:36s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:21:35 IlluminaBasecallsConverter Write 160,000,000 records. Elapsed time: 01:21:08s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:22:16 IlluminaBasecallsConverter Write 161,000,000 records. Elapsed time: 01:21:48s. Time for last 1,000,000: 40s. Last read position: */*
INFO 2014-11-18 21:22:48 IlluminaBasecallsConverter Write 162,000,000 records. Elapsed time: 01:22:20s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:23:19 IlluminaBasecallsConverter Write 163,000,000 records. Elapsed time: 01:22:52s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:23:57 IlluminaBasecallsConverter Write 164,000,000 records. Elapsed time: 01:23:30s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:24:29 IlluminaBasecallsConverter Write 165,000,000 records. Elapsed time: 01:24:02s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:25:07 IlluminaBasecallsConverter Write 166,000,000 records. Elapsed time: 01:24:39s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:25:38 IlluminaBasecallsConverter Write 167,000,000 records. Elapsed time: 01:25:11s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:26:10 IlluminaBasecallsConverter Write 168,000,000 records. Elapsed time: 01:25:43s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:26:46 IlluminaBasecallsConverter Write 169,000,000 records. Elapsed time: 01:26:19s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 21:27:19 IlluminaBasecallsConverter Write 170,000,000 records. Elapsed time: 01:26:51s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:27:56 IlluminaBasecallsConverter Write 171,000,000 records. Elapsed time: 01:27:29s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:28:28 IlluminaBasecallsConverter Write 172,000,000 records. Elapsed time: 01:28:01s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:29:01 IlluminaBasecallsConverter Write 173,000,000 records. Elapsed time: 01:28:34s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:29:38 IlluminaBasecallsConverter Write 174,000,000 records. Elapsed time: 01:29:11s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:30:11 IlluminaBasecallsConverter Write 175,000,000 records. Elapsed time: 01:29:44s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:30:42 IlluminaBasecallsConverter Write 176,000,000 records. Elapsed time: 01:30:14s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 21:31:19 IlluminaBasecallsConverter Write 177,000,000 records. Elapsed time: 01:30:52s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:31:52 IlluminaBasecallsConverter Write 178,000,000 records. Elapsed time: 01:31:25s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:32:30 IlluminaBasecallsConverter Write 179,000,000 records. Elapsed time: 01:32:03s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:33:04 IlluminaBasecallsConverter Write 180,000,000 records. Elapsed time: 01:32:36s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 21:33:36 IlluminaBasecallsConverter Write 181,000,000 records. Elapsed time: 01:33:09s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:34:14 IlluminaBasecallsConverter Write 182,000,000 records. Elapsed time: 01:33:47s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:34:46 IlluminaBasecallsConverter Write 183,000,000 records. Elapsed time: 01:34:19s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:35:21 IlluminaBasecallsConverter Write 184,000,000 records. Elapsed time: 01:34:54s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 21:35:52 IlluminaBasecallsConverter Write 185,000,000 records. Elapsed time: 01:35:25s. Time for last 1,000,000: 30s. Last read position: */*
INFO 2014-11-18 21:36:24 IlluminaBasecallsConverter Write 186,000,000 records. Elapsed time: 01:35:57s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:37:03 IlluminaBasecallsConverter Write 187,000,000 records. Elapsed time: 01:36:35s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:37:36 IlluminaBasecallsConverter Write 188,000,000 records. Elapsed time: 01:37:09s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 21:38:09 IlluminaBasecallsConverter Write 189,000,000 records. Elapsed time: 01:37:41s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:38:48 IlluminaBasecallsConverter Write 190,000,000 records. Elapsed time: 01:38:20s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:39:21 IlluminaBasecallsConverter Write 191,000,000 records. Elapsed time: 01:38:54s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 21:39:55 IlluminaBasecallsConverter Write 192,000,000 records. Elapsed time: 01:39:28s. Time for last 1,000,000: 33s. Last read position: */*
INFO 2014-11-18 21:40:33 IlluminaBasecallsConverter Write 193,000,000 records. Elapsed time: 01:40:06s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:41:03 IlluminaBasecallsConverter Write 194,000,000 records. Elapsed time: 01:40:35s. Time for last 1,000,000: 29s. Last read position: */*
INFO 2014-11-18 21:41:40 IlluminaBasecallsConverter Write 195,000,000 records. Elapsed time: 01:41:12s. Time for last 1,000,000: 37s. Last read position: */*
INFO 2014-11-18 21:42:11 IlluminaBasecallsConverter Write 196,000,000 records. Elapsed time: 01:41:44s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:42:43 IlluminaBasecallsConverter Write 197,000,000 records. Elapsed time: 01:42:16s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:43:21 IlluminaBasecallsConverter Write 198,000,000 records. Elapsed time: 01:42:54s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:43:53 IlluminaBasecallsConverter Write 199,000,000 records. Elapsed time: 01:43:25s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:44:24 IlluminaBasecallsConverter Write 200,000,000 records. Elapsed time: 01:43:56s. Time for last 1,000,000: 31s. Last read position: */*
INFO 2014-11-18 21:45:02 IlluminaBasecallsConverter Write 201,000,000 records. Elapsed time: 01:44:35s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:45:34 IlluminaBasecallsConverter Write 202,000,000 records. Elapsed time: 01:45:07s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:46:06 IlluminaBasecallsConverter Write 203,000,000 records. Elapsed time: 01:45:39s. Time for last 1,000,000: 32s. Last read position: */*
INFO 2014-11-18 21:46:45 IlluminaBasecallsConverter Write 204,000,000 records. Elapsed time: 01:46:17s. Time for last 1,000,000: 38s. Last read position: */*
INFO 2014-11-18 21:47:20 IlluminaBasecallsConverter Write 205,000,000 records. Elapsed time: 01:46:53s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 21:47:56 IlluminaBasecallsConverter Write 206,000,000 records. Elapsed time: 01:47:28s. Time for last 1,000,000: 35s. Last read position: */*
INFO 2014-11-18 21:48:08 IlluminaBasecallsConverter All work is complete.
[Tue Nov 18 21:48:11 EST 2014] picard.illumina.IlluminaBasecallsToSam done. Elapsed time: 107.74 minutes.
Runtime.totalMemory()=347209728
To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp
Exception in thread "main" htsjdk.samtools.util.RuntimeIOException: Terminator block not found after closing BGZF file /idi/sabeti-data/nacho/ebola_pbmc2/calculations/bam/pbmc_01_05.bam
at htsjdk.samtools.util.BinaryCodec.close(BinaryCodec.java:610)
at htsjdk.samtools.BAMFileWriter.finish(BAMFileWriter.java:136)
at htsjdk.samtools.SAMFileWriterImpl.close(SAMFileWriterImpl.java:205)
at picard.illumina.IlluminaBasecallsToSam$SAMFileWriterWrapper.close(IlluminaBasecallsToSam.java:468)
at picard.illumina.IlluminaBasecallsConverter.doTileProcessing(IlluminaBasecallsConverter.java:334)
at picard.illumina.IlluminaBasecallsToSam.doWork(IlluminaBasecallsToSam.java:208)
at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:185)
at picard.illumina.IlluminaBasecallsToSam.main(IlluminaBasecallsToSam.java:414)
Caused by: java.io.IOException: Terminator block not found after closing BGZF file /idi/sabeti-data/nacho/ebola_pbmc2/calculations/bam/pbmc_01_05.bam
at htsjdk.samtools.util.BlockCompressedOutputStream.close(BlockCompressedOutputStream.java:232)
at java.io.FilterOutputStream.close(FilterOutputStream.java:160)
at htsjdk.samtools.util.BinaryCodec.close(BinaryCodec.java:606)
... 7 more
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment