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nanis/Build Bio::DB::Sam on ArchLinux.txt

Created March 24, 2016 20:01
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Build Bio::DB::Sam on ArchLinux.txt
$ tar -xvf samtools-0.1.18.tar.bz2
$ cd samtools-0.1.18
$ make CFLAGS=-fPIC
Note, there are problems building this with GCC 5.3.0 because of the
use of `inline` with functions that are supposed to go in to a library.
Once that is fixed, library builds fine.
$ export SAMTOOLS=`pwd`; ~/perl/5.22.0/bin/cpanm Bio::DB::Sam
--> Working on Bio::DB::Sam
Fetching http://www.cpan.org/authors/id/L/LD/LDS/Bio-SamTools-1.43.tar.gz ... OK
Configuring Bio-SamTools-1.43 ... OK
Building and testing Bio-SamTools-1.43 ... OK
Successfully installed Bio-SamTools-1.43
1 distribution installed
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