jbrowse.pytb

RefactoringTool DEBUG 2021-02-10 22:58:00,404 Refactoring auto_translate_cheetah
galaxy.jobs.runners ERROR 2021-02-10 22:58:01,444 (33368295) Failure preparing job
Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/__init__.py", line 1039, in unicodify
    value = str(value)
  File "/cvmfs/main.galaxyproject.org/venv/lib/python3.6/site-packages/Cheetah/Template.py", line 1053, in __unicode__
    return getattr(self, mainMethName)()
  File "cheetah_DynamicallyCompiledCheetahTemplate_1613019481_1763794_97887.py", line 157, in respond
TypeError: 'NoneType' object is not callable

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/template.py", line 80, in fill_template
    return unicodify(t)
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/__init__.py", line 1044, in unicodify
    msg = "Value '{}' could not be coerced to Unicode: {}('{}')".format(value, type(e).__name__, e)
  File "/cvmfs/main.galaxyproject.org/venv/lib/python3.6/site-packages/Cheetah/Template.py", line 1053, in __unicode__
    return getattr(self, mainMethName)()
  File "cheetah_DynamicallyCompiledCheetahTemplate_1613019481_1763794_97887.py", line 157, in respond
TypeError: 'NoneType' object is not callable

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/jobs/runners/__init__.py", line 235, in prepare_job
    job_wrapper.prepare()
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/jobs/__init__.py", line 1123, in prepare
    self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build()
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/tools/evaluation.py", line 451, in build
    raise e
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/tools/evaluation.py", line 447, in build
    self.__build_config_files()
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/tools/evaluation.py", line 523, in __build_config_files
    self.__write_workdir_file(config_filename, config_text, param_dict, is_template=is_template)
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/tools/evaluation.py", line 616, in __write_workdir_file
    value = fill_template(content, context=context, python_template_version=self.tool.python_template_version)
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/template.py", line 124, in fill_template
    python_template_version=python_template_version,
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/template.py", line 126, in fill_template
    raise first_exception or e
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/template.py", line 80, in fill_template
    return unicodify(t)
  File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/util/__init__.py", line 1044, in unicodify
    msg = "Value '{}' could not be coerced to Unicode: {}('{}')".format(value, type(e).__name__, e)
  File "/cvmfs/main.galaxyproject.org/venv/lib/python3.6/site-packages/Cheetah/Template.py", line 1053, in __unicode__
    return getattr(self, mainMethName)()
  File "cheetah_DynamicallyCompiledCheetahTemplate_1613019479_3131492_42202.py", line 154, in respond
TypeError: 'NoneType' object is not callable