As galaxyguest
:
sudo apt-get install docker.io npm nodejs-legacy
sudo usermod -a -G docker galaxy
sudo -Hsu galaxy
As galaxy
:
docker pull quay.io/bgruening/docker-jupyter-notebook:16.01.1 # not explicitly necessary, GIE will do this
cd /srv/galaxy/server/lib/galaxy/web/proxy/js
npm install
cd /srv/galaxy/server/config/plugins/interactive_environments/jupyter/config
cp jupyter.ini.sample jupyter.ini
cp allowed_images.yml.sample allowed_images.yml
vim allowed_images.yml
cd /srv/galaxy/server/
vim galaxy.ini
exit
As galaxyguest
:
sudo vi /etc/nginx/sites-available/galaxy
sudo vi /etc/supervisor/conf.d/galaxy.conf
sudo systemctl restart nginx
sudo supervisorctl update
sudo supervisorctl restart gx:galaxy
Log in to Galaxy and click the viz link on a dataset...