pulsar-deps.pytb

2020-09-22 17:50:57,516 ERROR [pulsar.managers.stateful][[manager=jetstream_tacc]-[action=preprocess]-[job=1306569]] Failed job preprocessing for job 1306569:
Traceback (most recent call last):
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/pulsar/managers/stateful.py", line 132, in _handling_of_preprocessing_state
  **launch_kwds
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/pulsar/managers/queued_drmaa.py", line 21, in launch
  setup_params=setup_params,
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/pulsar/managers/base/base_drmaa.py", line 65, in _build_template_attributes
  setup_params=setup_params
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/pulsar/managers/base/directory.py", line 120, in _setup_job_file
  command_line = self._expand_command_line(command_line, dependencies_description, job_directory=self.job_directory(job_id).job_directory)
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/pulsar/managers/base/__init__.py", line 197, in _expand_command_line
  job_directory=job_directory,
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/__init__.py", line 181, in dependency_shell_commands
  requirements_to_dependencies = self.requirements_to_dependencies(requirements, **kwds)
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/__init__.py", line 191, in requirements_to_dependencies
  requirement_to_dependency = self._requirements_to_dependencies_dict(requirements, **kwds)
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/__init__.py", line 261, in _requirements_to_dependencies_dict
  **kwds)
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/resolvers/conda.py", line 211, in resolve_all
  expanded_requirements = ToolRequirements([self._expand_requirement(r) for r in requirements])
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/requirements.py", line 103, in __init__
  self.tool_requirements = OrderedSet([r if isinstance(r, ToolRequirement) else ToolRequirement.from_dict(r) for r in tool_requirements])
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/requirements.py", line 103, in <listcomp>
  self.tool_requirements = OrderedSet([r if isinstance(r, ToolRequirement) else ToolRequirement.from_dict(r) for r in tool_requirements])
File "/srv/pulsar/test/venv/lib64/python3.6/site-packages/galaxy/tool_util/deps/requirements.py", line 39, in from_dict
  version = dict.get("version", None)
AttributeError: 'ToolRequirement' object has no attribute 'get'