Skip to content

Instantly share code, notes, and snippets.

@naumenko-sa
Created April 24, 2019 20:28
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save naumenko-sa/8580e1bc91602fd67dc6331e7002dbdf to your computer and use it in GitHub Desktop.
Save naumenko-sa/8580e1bc91602fd67dc6331e7002dbdf to your computer and use it in GitHub Desktop.
INFO fields from gnomad2.1 to remove in cloudbiolinux installation
ab_hist_alt_bin_freq
age_hist_het_bin_freq
age_hist_het_n_larger
age_hist_het_n_smaller
age_hist_hom_bin_freq
age_hist_hom_n_larger
age_hist_hom_n_smaller
controls_AC
controls_AC_afr
controls_AC_afr_female
controls_AC_afr_male
controls_AC_amr
controls_AC_amr_female
controls_AC_amr_male
controls_AC_asj
controls_AC_asj_female
controls_AC_asj_male
controls_AC_eas
controls_AC_eas_female
controls_AC_eas_jpn
controls_AC_eas_kor
controls_AC_eas_male
controls_AC_eas_oea
controls_AC_female
controls_AC_fin
controls_AC_fin_female
controls_AC_fin_male
controls_AC_male
controls_AC_nfe
controls_AC_nfe_bgr
controls_AC_nfe_est
controls_AC_nfe_female
controls_AC_nfe_male
controls_AC_nfe_nwe
controls_AC_nfe_onf
controls_AC_nfe_seu
controls_AC_nfe_swe
controls_AC_oth
controls_AC_oth_female
controls_AC_oth_male
controls_AC_raw
controls_AC_sas
controls_AC_sas_female
controls_AC_sas_male
controls_AF
controls_AF_afr
controls_AF_afr_female
controls_AF_afr_male
controls_AF_amr
controls_AF_amr_female
controls_AF_amr_male
controls_AF_asj
controls_AF_asj_female
controls_AF_asj_male
controls_AF_eas
controls_AF_eas_female
controls_AF_eas_jpn
controls_AF_eas_kor
controls_AF_eas_male
controls_AF_eas_oea
controls_AF_female
controls_AF_fin
controls_AF_fin_female
controls_AF_fin_male
controls_AF_male
controls_AF_nfe
controls_AF_nfe_bgr
controls_AF_nfe_est
controls_AF_nfe_female
controls_AF_nfe_male
controls_AF_nfe_nwe
controls_AF_nfe_onf
controls_AF_nfe_seu
controls_AF_nfe_swe
controls_AF_oth
controls_AF_oth_female
controls_AF_oth_male
controls_AF_raw
controls_AF_sas
controls_AF_sas_female
controls_AF_sas_male
controls_AN
controls_AN_afr
controls_AN_afr_female
controls_AN_afr_male
controls_AN_amr
controls_AN_amr_female
controls_AN_amr_male
controls_AN_asj
controls_AN_asj_female
controls_AN_asj_male
controls_AN_eas
controls_AN_eas_female
controls_AN_eas_jpn
controls_AN_eas_kor
controls_AN_eas_male
controls_AN_eas_oea
controls_AN_female
controls_AN_fin
controls_AN_fin_female
controls_AN_fin_male
controls_AN_male
controls_AN_nfe
controls_AN_nfe_bgr
controls_AN_nfe_est
controls_AN_nfe_female
controls_AN_nfe_male
controls_AN_nfe_nwe
controls_AN_nfe_onf
controls_AN_nfe_seu
controls_AN_nfe_swe
controls_AN_oth
controls_AN_oth_female
controls_AN_oth_male
controls_AN_raw
controls_AN_sas
controls_AN_sas_female
controls_AN_sas_male
controls_faf95
controls_faf95_afr
controls_faf95_amr
controls_faf95_eas
controls_faf95_nfe
controls_faf95_sas
controls_faf99
controls_faf99_afr
controls_faf99_amr
controls_faf99_eas
controls_faf99_nfe
controls_faf99_sas
controls_nhomalt
controls_nhomalt_afr
controls_nhomalt_afr_female
controls_nhomalt_afr_male
controls_nhomalt_amr
controls_nhomalt_amr_female
controls_nhomalt_amr_male
controls_nhomalt_asj
controls_nhomalt_asj_female
controls_nhomalt_asj_male
controls_nhomalt_eas
controls_nhomalt_eas_female
controls_nhomalt_eas_jpn
controls_nhomalt_eas_kor
controls_nhomalt_eas_male
controls_nhomalt_eas_oea
controls_nhomalt_female
controls_nhomalt_fin
controls_nhomalt_fin_female
controls_nhomalt_fin_male
controls_nhomalt_male
controls_nhomalt_nfe
controls_nhomalt_nfe_bgr
controls_nhomalt_nfe_est
controls_nhomalt_nfe_female
controls_nhomalt_nfe_male
controls_nhomalt_nfe_nwe
controls_nhomalt_nfe_onf
controls_nhomalt_nfe_seu
controls_nhomalt_nfe_swe
controls_nhomalt_oth
controls_nhomalt_oth_female
controls_nhomalt_oth_male
controls_nhomalt_raw
controls_nhomalt_sas
controls_nhomalt_sas_female
controls_nhomalt_sas_male
controls_popmax
controls_AC_popmax
controls_AN_popmax
controls_AF_popmax
controls_nhomalt_popmax
dp_hist_all_bin_freq
dp_hist_all_n_larger
dp_hist_alt_bin_freq
dp_hist_alt_n_larger
faf95_afr
faf95_amr
faf95_eas
faf95_nfe
faf95_sas
faf99_afr
faf99_amr
faf99_eas
faf99_nfe
faf99_sas
gq_hist_all_bin_freq
gq_hist_alt_bin_freq
has_star
non_cancer_AC
non_cancer_AC_afr
non_cancer_AC_afr_female
non_cancer_AC_afr_male
non_cancer_AC_amr
non_cancer_AC_amr_female
non_cancer_AC_amr_male
non_cancer_AC_asj
non_cancer_AC_asj_female
non_cancer_AC_asj_male
non_cancer_AC_eas
non_cancer_AC_eas_female
non_cancer_AC_eas_jpn
non_cancer_AC_eas_kor
non_cancer_AC_eas_male
non_cancer_AC_eas_oea
non_cancer_AC_female
non_cancer_AC_fin
non_cancer_AC_fin_female
non_cancer_AC_fin_male
non_cancer_AC_male
non_cancer_AC_nfe
non_cancer_AC_nfe_bgr
non_cancer_AC_nfe_est
non_cancer_AC_nfe_female
non_cancer_AC_nfe_male
non_cancer_AC_nfe_nwe
non_cancer_AC_nfe_onf
non_cancer_AC_nfe_seu
non_cancer_AC_nfe_swe
non_cancer_AC_oth
non_cancer_AC_oth_female
non_cancer_AC_oth_male
non_cancer_AC_raw
non_cancer_AC_sas
non_cancer_AC_sas_female
non_cancer_AC_sas_male
non_cancer_AF
non_cancer_AF_afr
non_cancer_AF_afr_female
non_cancer_AF_afr_male
non_cancer_AF_amr
non_cancer_AF_amr_female
non_cancer_AF_amr_male
non_cancer_AF_asj
non_cancer_AF_asj_female
non_cancer_AF_asj_male
non_cancer_AF_eas
non_cancer_AF_eas_female
non_cancer_AF_eas_jpn
non_cancer_AF_eas_kor
non_cancer_AF_eas_male
non_cancer_AF_eas_oea
non_cancer_AF_female
non_cancer_AF_fin
non_cancer_AF_fin_female
non_cancer_AF_fin_male
non_cancer_AF_male
non_cancer_AF_nfe
non_cancer_AF_nfe_bgr
non_cancer_AF_nfe_est
non_cancer_AF_nfe_female
non_cancer_AF_nfe_male
non_cancer_AF_nfe_nwe
non_cancer_AF_nfe_onf
non_cancer_AF_nfe_seu
non_cancer_AF_nfe_swe
non_cancer_AF_oth
non_cancer_AF_oth_female
non_cancer_AF_oth_male
non_cancer_AF_raw
non_cancer_AF_sas
non_cancer_AF_sas_female
non_cancer_AF_sas_male
non_cancer_AN
non_cancer_AN_afr
non_cancer_AN_afr_female
non_cancer_AN_afr_male
non_cancer_AN_amr
non_cancer_AN_amr_female
non_cancer_AN_amr_male
non_cancer_AN_asj
non_cancer_AN_asj_female
non_cancer_AN_asj_male
non_cancer_AN_eas
non_cancer_AN_eas_female
non_cancer_AN_eas_jpn
non_cancer_AN_eas_kor
non_cancer_AN_eas_male
non_cancer_AN_eas_oea
non_cancer_AN_female
non_cancer_AN_fin
non_cancer_AN_fin_female
non_cancer_AN_fin_male
non_cancer_AN_male
non_cancer_AN_nfe
non_cancer_AN_nfe_bgr
non_cancer_AN_nfe_est
non_cancer_AN_nfe_female
non_cancer_AN_nfe_male
non_cancer_AN_nfe_nwe
non_cancer_AN_nfe_onf
non_cancer_AN_nfe_seu
non_cancer_AN_nfe_swe
non_cancer_AN_oth
non_cancer_AN_oth_female
non_cancer_AN_oth_male
non_cancer_AN_raw
non_cancer_AN_sas
non_cancer_AN_sas_female
non_cancer_AN_sas_male
non_cancer_faf95
non_cancer_faf95_afr
non_cancer_faf95_amr
non_cancer_faf95_eas
non_cancer_faf95_nfe
non_cancer_faf95_sas
non_cancer_faf99
non_cancer_faf99_afr
non_cancer_faf99_amr
non_cancer_faf99_eas
non_cancer_faf99_nfe
non_cancer_faf99_sas
non_cancer_nhomalt
non_cancer_nhomalt_afr
non_cancer_nhomalt_afr_female
non_cancer_nhomalt_afr_male
non_cancer_nhomalt_amr
non_cancer_nhomalt_amr_female
non_cancer_nhomalt_amr_male
non_cancer_nhomalt_asj
non_cancer_nhomalt_asj_female
non_cancer_nhomalt_asj_male
non_cancer_nhomalt_eas
non_cancer_nhomalt_eas_female
non_cancer_nhomalt_eas_jpn
non_cancer_nhomalt_eas_kor
non_cancer_nhomalt_eas_male
non_cancer_nhomalt_eas_oea
non_cancer_nhomalt_female
non_cancer_nhomalt_fin
non_cancer_nhomalt_fin_female
non_cancer_nhomalt_fin_male
non_cancer_nhomalt_male
non_cancer_nhomalt_nfe
non_cancer_nhomalt_nfe_bgr
non_cancer_nhomalt_nfe_est
non_cancer_nhomalt_nfe_female
non_cancer_nhomalt_nfe_male
non_cancer_nhomalt_nfe_nwe
non_cancer_nhomalt_nfe_onf
non_cancer_nhomalt_nfe_seu
non_cancer_nhomalt_nfe_swe
non_cancer_nhomalt_oth
non_cancer_nhomalt_oth_female
non_cancer_nhomalt_oth_male
non_cancer_nhomalt_raw
non_cancer_nhomalt_sas
non_cancer_nhomalt_sas_female
non_cancer_nhomalt_sas_male
non_cancer_popmax
non_cancer_AC_popmax
non_cancer_AN_popmax
non_cancer_AF_popmax
non_cancer_nhomalt_popmax
non_neuro_AC
non_neuro_AC_afr
non_neuro_AC_afr_female
non_neuro_AC_afr_male
non_neuro_AC_amr
non_neuro_AC_amr_female
non_neuro_AC_amr_male
non_neuro_AC_asj
non_neuro_AC_asj_female
non_neuro_AC_asj_male
non_neuro_AC_eas
non_neuro_AC_eas_female
non_neuro_AC_eas_jpn
non_neuro_AC_eas_kor
non_neuro_AC_eas_male
non_neuro_AC_eas_oea
non_neuro_AC_female
non_neuro_AC_fin
non_neuro_AC_fin_female
non_neuro_AC_fin_male
non_neuro_AC_male
non_neuro_AC_nfe
non_neuro_AC_nfe_bgr
non_neuro_AC_nfe_est
non_neuro_AC_nfe_female
non_neuro_AC_nfe_male
non_neuro_AC_nfe_nwe
non_neuro_AC_nfe_onf
non_neuro_AC_nfe_seu
non_neuro_AC_nfe_swe
non_neuro_AC_oth
non_neuro_AC_oth_female
non_neuro_AC_oth_male
non_neuro_AC_popmax
non_neuro_AC_raw
non_neuro_AC_sas
non_neuro_AC_sas_female
non_neuro_AC_sas_male
non_neuro_AF
non_neuro_AF_afr
non_neuro_AF_afr_female
non_neuro_AF_afr_male
non_neuro_AF_amr
non_neuro_AF_amr_female
non_neuro_AF_amr_male
non_neuro_AF_asj
non_neuro_AF_asj_female
non_neuro_AF_asj_male
non_neuro_AF_eas
non_neuro_AF_eas_female
non_neuro_AF_eas_jpn
non_neuro_AF_eas_kor
non_neuro_AF_eas_male
non_neuro_AF_eas_oea
non_neuro_AF_female
non_neuro_AF_fin
non_neuro_AF_fin_female
non_neuro_AF_fin_male
non_neuro_AF_male
non_neuro_AF_nfe
non_neuro_AF_nfe_bgr
non_neuro_AF_nfe_est
non_neuro_AF_nfe_female
non_neuro_AF_nfe_male
non_neuro_AF_nfe_nwe
non_neuro_AF_nfe_onf
non_neuro_AF_nfe_seu
non_neuro_AF_nfe_swe
non_neuro_AF_oth
non_neuro_AF_oth_female
non_neuro_AF_oth_male
non_neuro_AF_raw
non_neuro_AF_sas
non_neuro_AF_sas_female
non_neuro_AF_sas_male
non_neuro_AN
non_neuro_AN_afr
non_neuro_AN_afr_female
non_neuro_AN_afr_male
non_neuro_AN_amr
non_neuro_AN_amr_female
non_neuro_AN_amr_male
non_neuro_AN_asj
non_neuro_AN_asj_female
non_neuro_AN_asj_male
non_neuro_AN_eas
non_neuro_AN_eas_female
non_neuro_AN_eas_jpn
non_neuro_AN_eas_kor
non_neuro_AN_eas_male
non_neuro_AN_eas_oea
non_neuro_AN_female
non_neuro_AN_fin
non_neuro_AN_fin_female
non_neuro_AN_fin_male
non_neuro_AN_male
non_neuro_AN_nfe
non_neuro_AN_nfe_bgr
non_neuro_AN_nfe_est
non_neuro_AN_nfe_female
non_neuro_AN_nfe_male
non_neuro_AN_nfe_nwe
non_neuro_AN_nfe_onf
non_neuro_AN_nfe_seu
non_neuro_AN_nfe_swe
non_neuro_AN_oth
non_neuro_AN_oth_female
non_neuro_AN_oth_male
non_neuro_AN_raw
non_neuro_AN_sas
non_neuro_AN_sas_female
non_neuro_AN_sas_male
non_neuro_faf95
non_neuro_faf95_afr
non_neuro_faf95_amr
non_neuro_faf95_eas
non_neuro_faf95_nfe
non_neuro_faf95_sas
non_neuro_faf99
non_neuro_faf99_afr
non_neuro_faf99_amr
non_neuro_faf99_eas
non_neuro_faf99_nfe
non_neuro_faf99_sas
non_neuro_nhomalt
non_neuro_nhomalt_afr
non_neuro_nhomalt_afr_female
non_neuro_nhomalt_afr_male
non_neuro_nhomalt_amr
non_neuro_nhomalt_amr_female
non_neuro_nhomalt_amr_male
non_neuro_nhomalt_asj
non_neuro_nhomalt_asj_female
non_neuro_nhomalt_asj_male
non_neuro_nhomalt_eas
non_neuro_nhomalt_eas_female
non_neuro_nhomalt_eas_jpn
non_neuro_nhomalt_eas_kor
non_neuro_nhomalt_eas_male
non_neuro_nhomalt_eas_oea
non_neuro_nhomalt_female
non_neuro_nhomalt_fin
non_neuro_nhomalt_fin_female
non_neuro_nhomalt_fin_male
non_neuro_nhomalt_male
non_neuro_nhomalt_nfe
non_neuro_nhomalt_nfe_bgr
non_neuro_nhomalt_nfe_est
non_neuro_nhomalt_nfe_female
non_neuro_nhomalt_nfe_male
non_neuro_nhomalt_nfe_nwe
non_neuro_nhomalt_nfe_onf
non_neuro_nhomalt_nfe_seu
non_neuro_nhomalt_nfe_swe
non_neuro_nhomalt_oth
non_neuro_nhomalt_oth_female
non_neuro_nhomalt_oth_male
non_neuro_nhomalt_raw
non_neuro_nhomalt_sas
non_neuro_nhomalt_sas_female
non_neuro_nhomalt_sas_male
non_neuro_popmax
non_neuro_AN_popmax
non_neuro_AF_popmax
non_neuro_nhomalt_popmax
non_topmed_AC
non_topmed_AC_afr
non_topmed_AC_afr_female
non_topmed_AC_afr_male
non_topmed_AC_amr
non_topmed_AC_amr_female
non_topmed_AC_amr_male
non_topmed_AC_asj
non_topmed_AC_asj_female
non_topmed_AC_asj_male
non_topmed_AC_eas
non_topmed_AC_eas_female
non_topmed_AC_eas_jpn
non_topmed_AC_eas_kor
non_topmed_AC_eas_male
non_topmed_AC_eas_oea
non_topmed_AC_female
non_topmed_AC_fin
non_topmed_AC_fin_female
non_topmed_AC_fin_male
non_topmed_AC_male
non_topmed_AC_nfe
non_topmed_AC_nfe_bgr
non_topmed_AC_nfe_est
non_topmed_AC_nfe_female
non_topmed_AC_nfe_male
non_topmed_AC_nfe_nwe
non_topmed_AC_nfe_onf
non_topmed_AC_nfe_seu
non_topmed_AC_nfe_swe
non_topmed_AC_oth
non_topmed_AC_oth_female
non_topmed_AC_oth_male
non_topmed_AC_popmax
non_topmed_AC_raw
non_topmed_AC_sas
non_topmed_AC_sas_female
non_topmed_AC_sas_male
non_topmed_AF
non_topmed_AF_afr
non_topmed_AF_afr_female
non_topmed_AF_afr_male
non_topmed_AF_amr
non_topmed_AF_amr_female
non_topmed_AF_amr_male
non_topmed_AF_asj
non_topmed_AF_asj_female
non_topmed_AF_asj_male
non_topmed_AF_eas
non_topmed_AF_eas_female
non_topmed_AF_eas_jpn
non_topmed_AF_eas_kor
non_topmed_AF_eas_male
non_topmed_AF_eas_oea
non_topmed_AF_female
non_topmed_AF_fin
non_topmed_AF_fin_female
non_topmed_AF_fin_male
non_topmed_AF_male
non_topmed_AF_nfe
non_topmed_AF_nfe_bgr
non_topmed_AF_nfe_est
non_topmed_AF_nfe_female
non_topmed_AF_nfe_male
non_topmed_AF_nfe_nwe
non_topmed_AF_nfe_onf
non_topmed_AF_nfe_seu
non_topmed_AF_nfe_swe
non_topmed_AF_oth
non_topmed_AF_oth_female
non_topmed_AF_oth_male
non_topmed_AF_popmax
non_topmed_AF_raw
non_topmed_AF_sas
non_topmed_AF_sas_female
non_topmed_AF_sas_male
non_topmed_AN
non_topmed_AN_afr
non_topmed_AN_afr_female
non_topmed_AN_afr_male
non_topmed_AN_amr
non_topmed_AN_amr_female
non_topmed_AN_amr_male
non_topmed_AN_asj
non_topmed_AN_asj_female
non_topmed_AN_asj_male
non_topmed_AN_eas
non_topmed_AN_eas_female
non_topmed_AN_eas_jpn
non_topmed_AN_eas_kor
non_topmed_AN_eas_male
non_topmed_AN_eas_oea
non_topmed_AN_female
non_topmed_AN_fin
non_topmed_AN_fin_female
non_topmed_AN_fin_male
non_topmed_AN_male
non_topmed_AN_nfe
non_topmed_AN_nfe_bgr
non_topmed_AN_nfe_est
non_topmed_AN_nfe_female
non_topmed_AN_nfe_male
non_topmed_AN_nfe_nwe
non_topmed_AN_nfe_onf
non_topmed_AN_nfe_seu
non_topmed_AN_nfe_swe
non_topmed_AN_oth
non_topmed_AN_oth_female
non_topmed_AN_oth_male
non_topmed_AN_popmax
non_topmed_AN_raw
non_topmed_AN_sas
non_topmed_AN_sas_female
non_topmed_AN_sas_male
non_topmed_faf95
non_topmed_faf95_afr
non_topmed_faf95_amr
non_topmed_faf95_eas
non_topmed_faf95_nfe
non_topmed_faf95_sas
non_topmed_faf99
non_topmed_faf99_afr
non_topmed_faf99_amr
non_topmed_faf99_eas
non_topmed_faf99_nfe
non_topmed_faf99_sas
non_topmed_nhomalt
non_topmed_nhomalt_afr
non_topmed_nhomalt_afr_female
non_topmed_nhomalt_afr_male
non_topmed_nhomalt_amr
non_topmed_nhomalt_amr_female
non_topmed_nhomalt_amr_male
non_topmed_nhomalt_asj
non_topmed_nhomalt_asj_female
non_topmed_nhomalt_asj_male
non_topmed_nhomalt_eas
non_topmed_nhomalt_eas_female
non_topmed_nhomalt_eas_jpn
non_topmed_nhomalt_eas_kor
non_topmed_nhomalt_eas_male
non_topmed_nhomalt_eas_oea
non_topmed_nhomalt_female
non_topmed_nhomalt_fin
non_topmed_nhomalt_fin_female
non_topmed_nhomalt_fin_male
non_topmed_nhomalt_male
non_topmed_nhomalt_nfe
non_topmed_nhomalt_nfe_bgr
non_topmed_nhomalt_nfe_est
non_topmed_nhomalt_nfe_female
non_topmed_nhomalt_nfe_male
non_topmed_nhomalt_nfe_nwe
non_topmed_nhomalt_nfe_onf
non_topmed_nhomalt_nfe_seu
non_topmed_nhomalt_nfe_swe
non_topmed_nhomalt_oth
non_topmed_nhomalt_oth_female
non_topmed_nhomalt_oth_male
non_topmed_nhomalt_popmax
non_topmed_nhomalt_raw
non_topmed_nhomalt_sas
non_topmed_nhomalt_sas_female
non_topmed_nhomalt_sas_male
non_topmed_popmax
nonpar
pab_max
rf_label
rf_negative_label
rf_positive_label
rf_tp_probability
rf_train
VQSLOD
VQSR_culprit
VQSR_NEGATIVE_TRAIN_SITE
VQSR_POSITIVE_TRAIN_SITE
was_mixed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment