Skip to content

Instantly share code, notes, and snippets.

@nehiljain

nehiljain/_.md

Last active August 29, 2015 14:13
Show Gist options
  • Save nehiljain/56f3a9d8ef4570097b5a to your computer and use it in GitHub Desktop.
Save nehiljain/56f3a9d8ef4570097b5a to your computer and use it in GitHub Desktop.
Download ZIP
modified working genechip
Raw
_.md
Raw
config.json
{"description":"modified working genechip","endpoint":"","display":"svg","public":true,"require":[],"fileconfigs":{"inlet.js":{"default":true,"vim":false,"emacs":false,"fontSize":12},"genedata.json":{"default":true,"vim":false,"emacs":false,"fontSize":12},"_.md":{"default":true,"vim":false,"emacs":false,"fontSize":12},"config.json":{"default":true,"vim":false,"emacs":false,"fontSize":12},"style.css":{"default":true,"vim":false,"emacs":false,"fontSize":12}},"fullscreen":false,"play":false,"loop":false,"restart":false,"autoinit":true,"pause":true,"loop_type":"pingpong","bv":false,"nclones":15,"clone_opacity":0.4,"duration":3000,"ease":"linear","dt":0.01,"ajax-caching":true,"thumbnail":"http://i.imgur.com/KgL2Xke.png","inline-console":true}
Raw
genedata.json
{
"profileId":1092,
"firstName":"Lilly",
"lastName":"Demo",
"demo":false,
"notes":null,
"children":[
{
"id":6,
"code":"motivation",
"percentile":68,
"score":5.195,
"normalizedScore":71.60578911095796,
"type":"category",
"children":[
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.22053756030323932
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.22053756030323932
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.22053756030323932
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.11853893866299114
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.030323914541695404
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.019297036526533442
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.01654031702274295
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.01654031702274295
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.01654031702274295
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.01240523776705721
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.00964851826326672
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.008270158511371474
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.008270158511371474
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.008270158511371474
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.008270158511371474
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005513439007580983
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005513439007580983
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005513439007580983
},
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.004135079255685737
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0027567195037904915
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0027567195037904915
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0027567195037904915
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0027567195037904915
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0027567195037904915
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0027567195037904915
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0027567195037904915
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0027567195037904915
},
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0027567195037904915
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0027567195037904915
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0027567195037904915
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0020675396278428686
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0013783597518952457
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0013783597518952457
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0013783597518952457
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0013783597518952457
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0013783597518952457
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0013783597518952457
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0013783597518952457
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0013783597518952457
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0006891798759476229
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0006891798759476229
}
],
"distributions":null
},
{
"id":1,
"code":"power",
"percentile":6,
"score":6.005,
"normalizedScore":52.72168568920106,
"type":"category",
"children":[
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.256804214223003
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.17120280948200198
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.12291483757682194
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.11940298507462702
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.1158911325724321
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.05706760316066732
},
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.01755926251097456
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.01755926251097456
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.01755926251097456
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.014047410008779649
},
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.00877963125548728
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.00877963125548728
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.006584723441615461
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.00438981562774364
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.00438981562774364
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.003511852502194912
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.003511852502194912
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003511852502194912
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.003511852502194912
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.003511852502194912
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.003511852502194912
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.003511852502194912
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.003511852502194912
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.002633889376646184
},
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.002633889376646184
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.00219490781387182
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001755926251097456
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001755926251097456
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.001755926251097456
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001755926251097456
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001755926251097456
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001755926251097456
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.001755926251097456
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.001755926251097456
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.001755926251097456
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001755926251097456
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.000877963125548728
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.000877963125548728
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.000877963125548728
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.000877963125548728
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.000438981562774364
}
],
"distributions":null
},
{
"id":2,
"code":"anaerobic_capacity",
"percentile":35,
"score":3.830000000000001,
"normalizedScore":55.06829618979153,
"type":"category",
"children":[
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.1581595974119339
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.14378145219266716
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.04888569374550683
},
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.04313443565780015
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.03594536304816679
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.03235082674335011
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.028756290438533436
},
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.028756290438533436
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.028756290438533436
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.028756290438533436
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.028756290438533436
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.028756290438533436
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.028756290438533436
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.02588066139468009
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.023005032350826748
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.023005032350826748
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.023005032350826748
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.023005032350826748
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.021567217828900077
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.014378145219266718
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.014378145219266718
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.014378145219266718
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.014378145219266718
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.014378145219266718
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.014378145219266718
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.014378145219266718
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.011502516175413374
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.011502516175413374
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.007189072609633359
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.007189072609633359
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.007189072609633359
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.007189072609633359
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.007189072609633359
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.007189072609633359
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.007189072609633359
},
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005751258087706687
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005751258087706687
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.004313443565780015
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0028756290438533435
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0028756290438533435
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0014378145219266717
}
],
"distributions":null
},
{
"id":3,
"code":"endurance",
"percentile":16,
"score":5.235,
"normalizedScore":39.87052551408988,
"type":"category",
"children":[
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.1256664127951257
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.08377760853008379
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.08377760853008379
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.08377760853008379
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.08377760853008379
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.04950495049504951
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.04188880426504189
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.04188880426504189
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.04188880426504189
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.04188880426504189
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.03655750190403656
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.027418126428027424
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.021325209444021328
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.021325209444021328
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.021325209444021328
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.020944402132520946
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.015232292460015234
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.015232292460015234
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.015232292460015234
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.012185833968012188
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.010662604722010664
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.010662604722010664
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.010662604722010664
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.010281797410510283
},
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.00913937547600914
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.00913937547600914
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.00913937547600914
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.007616146230007617
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.007616146230007617
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.007616146230007617
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.006854531607006855
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003046458492003047
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.002284843869002285
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.002284843869002285
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.002284843869002285
},
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0015232292460015235
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0015232292460015235
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0011424219345011425
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0007616146230007617
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0007616146230007617
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.00038080731150038087
}
],
"distributions":null
},
{
"id":4,
"code":"metabolic_efficiency",
"percentile":62,
"score":9.44,
"normalizedScore":81.59031979256699,
"type":"category",
"children":[
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.1979256698357824
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.12964563526361292
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.12964563526361292
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.12964563526361292
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.06655142610198796
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.06482281763180646
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.06482281763180646
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.03716508210890237
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.02420051858254108
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.02420051858254108
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.02420051858254108
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.01210025929127054
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.01210025929127054
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.01210025929127054
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.007778738115816774
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.006914433880726022
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005185825410544516
},
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005185825410544516
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005185825410544516
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003457216940363011
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003457216940363011
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003457216940363011
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003457216940363011
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.003457216940363011
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0017286084701815055
},
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0017286084701815055
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0017286084701815055
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0017286084701815055
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0017286084701815055
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0017286084701815055
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0017286084701815055
},
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0017286084701815055
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0017286084701815055
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0017286084701815055
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001296456352636129
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0008643042350907527
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0008643042350907527
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0008643042350907527
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0008643042350907527
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0008643042350907527
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.00043215211754537636
}
],
"distributions":null
},
{
"id":5,
"code":"recovery",
"percentile":68,
"score":2.825,
"normalizedScore":81.06169296987088,
"type":"category",
"children":[
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.39024390243902446
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.06886657101865137
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.06312769010043043
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.05738880918220948
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.03443328550932569
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.03443328550932569
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.03443328550932569
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.02869440459110474
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.02869440459110474
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.025824964131994265
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.020086083213773316
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.020086083213773316
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.017216642754662843
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.017216642754662843
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.017216642754662843
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.011477761836441896
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.011477761836441896
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.011477761836441896
},
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.008608321377331422
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.005738880918220948
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005738880918220948
},
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.005738880918220948
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005738880918220948
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005738880918220948
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005738880918220948
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005738880918220948
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005738880918220948
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005738880918220948
},
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005738880918220948
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005738880918220948
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.005738880918220948
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.005738880918220948
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.004304160688665711
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.002869440459110474
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.002869440459110474
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.002869440459110474
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.002869440459110474
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.002869440459110474
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.002869440459110474
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.001434720229555237
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.001434720229555237
}
],
"distributions":null
},
{
"id":7,
"code":"injury_protection",
"percentile":68,
"score":3.2850000000000006,
"normalizedScore":73.57222844344906,
"type":"category",
"children":[
{
"id":29,
"name":"rs591058",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.17917133258678625
},
{
"id":30,
"name":"rs679620",
"geneCode":"MMP3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.17917133258678625
},
{
"id":13,
"name":"rs1800012",
"geneCode":"COL1A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.1343784994400897
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.08958566629339312
},
{
"id":19,
"name":"rs2073711",
"geneCode":"CILP",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.08958566629339312
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.05375139977603587
},
{
"id":24,
"name":"rs3196378",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.04479283314669656
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.02239641657334828
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.02015677491601345
},
{
"id":21,
"name":"rs2253206",
"geneCode":"CREB1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.015677491601343792
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.013437849944008966
},
{
"id":32,
"name":"rs699",
"geneCode":"AGT",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.013437849944008966
},
{
"id":18,
"name":"rs2016520",
"geneCode":"PPARD",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.008958566629339311
},
{
"id":20,
"name":"rs211302",
"geneCode":"KIF5B",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.008958566629339311
},
{
"id":22,
"name":"rs2267668",
"geneCode":"PPARD",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.008958566629339311
},
{
"id":23,
"name":"rs2402970",
"geneCode":"NRF1",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.008958566629339311
},
{
"id":31,
"name":"rs6949152",
"geneCode":"NRF1",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.008958566629339311
},
{
"id":35,
"name":"rs8192678",
"geneCode":"PPARGC1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.008958566629339311
},
{
"id":4,
"name":"rs11549465",
"geneCode":"HIF1A",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.006718924972004483
},
{
"id":26,
"name":"rs4994",
"geneCode":"ADRB3",
"snpValue":"AA",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.006718924972004483
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0044792833146696555
},
{
"id":1,
"name":"rs1042713",
"geneCode":"ADRB2",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":2,
"name":"rs10887741",
"geneCode":"PAPSS2",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0044792833146696555
},
{
"id":5,
"name":"rs1208",
"geneCode":"NAT2",
"snpValue":"--",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":6,
"name":"rs12612420",
"geneCode":"SPATS2L",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":8,
"name":"rs16139",
"geneCode":"NPY",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0044792833146696555
},
{
"id":11,
"name":"rs1799722",
"geneCode":"BDKRB2",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":12,
"name":"rs1799945",
"geneCode":"HFE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":14,
"name":"rs1800562",
"geneCode":"HFE",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":16,
"name":"rs1801253",
"geneCode":"ADRB1",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0044792833146696555
},
{
"id":25,
"name":"rs429358",
"geneCode":"APOE",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0044792833146696555
},
{
"id":27,
"name":"rs670",
"geneCode":"APOA1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0044792833146696555
},
{
"id":33,
"name":"rs7412",
"geneCode":"APOE",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0044792833146696555
},
{
"id":34,
"name":"rs8097348",
"geneCode":"C18orf2",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0044792833146696555
},
{
"id":3,
"name":"rs1143634",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0022396416573348277
},
{
"id":7,
"name":"rs12722",
"geneCode":"COL5A1",
"snpValue":"CC",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0022396416573348277
},
{
"id":9,
"name":"rs16944",
"geneCode":"IL1B",
"snpValue":"AG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0022396416573348277
},
{
"id":10,
"name":"rs17602729",
"geneCode":"AMPD1",
"snpValue":"GG",
"type":"snp",
"alleleMatchingFactor":0,
"weight":0.0022396416573348277
},
{
"id":17,
"name":"rs1815739",
"geneCode":"ACTN3",
"snpValue":"TT",
"type":"snp",
"alleleMatchingFactor":2,
"weight":0.0022396416573348277
},
{
"id":28,
"name":"rs5443",
"geneCode":"GNB3",
"snpValue":"CT",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0022396416573348277
},
{
"id":15,
"name":"rs1800795",
"geneCode":"IL6",
"snpValue":"CG",
"type":"snp",
"alleleMatchingFactor":1,
"weight":0.0011198208286674139
}
],
"distributions":null
}
]
}
Raw
inlet.js
var margin = {top: 20, right: 0, bottom: 0, left: 0},
width = 820,
height = 700 - margin.top - margin.bottom,
formatNumber = d3.format(",d"),
transitioning;
/* create x and y scales */
var x = d3.scale.linear()
.domain([0, width])
.range([0, width]);
var y = d3.scale.linear()
.domain([0, height])
.range([0, height]);
var treemap = d3.layout.treemap()
.value(function(d) {if (d.type === "category") {return Math.round(d.normalizedScore);}
else {return d.weight;}
})
.children(function(d, depth) { return depth ? null : d.children; })
.sort(function(a, b) { return a.weight - b.weight; }) //this can sort all the tiles based on something. Currently it sums all the 'value's of the leaf nodes and then sort the parent based on that.
.ratio(height / width * 0.5 * (1 + Math.sqrt(5)))
.round(false);
/* create svg */
var svg = d3.select("svg").append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.bottom + margin.top)
.style("margin-left", -margin.left + "px")
.style("margin.right", -margin.right + "px")
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")")
.style("shape-rendering", "crispEdges");
var color = d3.scale.category20c();
var grandparent = svg.append("g")
.attr("class", "grandparent");
grandparent.append("rect")
.attr("y", -margin.top)
.attr("width", width)
.attr("height", margin.top);
grandparent.append("text")
.attr("x", 6)
.attr("y", 6 - margin.top)
.attr("dy", ".75em");
root = tributary.genedata;
initialize(root);
accumulate(root);
layout(root);
display(root);
function initialize(root) {
root.x = root.y = 0;
root.dx = width;
root.dy = height;
root.depth = 0;
}
// Aggregate the values for internal nodes. This is normally done by the
// treemap layout, but not here because of the custom implementation.
function accumulate(d) {
return d.children
? d.value = d.children.reduce(function(p, v) { return p + accumulate(v); }, 0)
: d.value;
}
// Compute the treemap layout recursively such that each group of siblings
// uses the same size (1×1) rather than the dimensions of the parent cell.
// This optimizes the layout for the current zoom state. Note that a wrapper
// object is created for the parent node for each group of siblings so that
// the parent’s dimensions are not discarded as we recurse. Since each group
// of sibling was laid out in 1×1, we must rescale to fit using absolute
// coordinates. This lets us use a viewport to zoom.
function layout(d) {
if (d.children) {
treemap.nodes({children: d.children});
d.children.forEach(function(c) {
c.x = d.x + c.x * d.dx;
c.y = d.y + c.y * d.dy;
c.dx *= d.dx;
c.dy *= d.dy;
c.parent = d;
layout(c);
});
}
}
/* display shows the treemap and writes the embedded transition function */
function display(d) {
/* create grandparent bar at top */
grandparent
.datum(d.parent)
.on("click", transition)
.select("text")
.text(name(d));
var g1 = svg.insert("g", ".grandparent")
.datum(d)
.attr("class", "depth");
/* add in data */
var g = g1.selectAll("g")
.data(d.children)
.enter().append("g");
/* transition on child click */
g.filter(function(d) { return d.children; })
.classed("children", true)
.on("click", transition);
/* write children rectangles */
g.selectAll(".child")
.data(function(d) { return d.children || [d]; })
.enter().append("rect")
.attr("class", "child")
.call(rect)
.append("title")
.text(function(d) { return d.name + " " + formatNumber(d.size); });
/* write parent rectangle */
g.append("rect")
.attr("class", "parent")
.call(rect)
/* open new window based on the json's URL value for leaf nodes */
/* Chrome displays this on top */
.on("click", function(d) {
if(!d.children){
window.open(d.url);
}
})
.append("title")
.text(function(d) { return d.name + " " + formatNumber(d.size); }); /*should be d.value*/
/* Adding a foreign object instead of a text object, allows for text wrapping */
g.append("foreignObject")
.call(rect)
/* open new window based on the json's URL value for leaf nodes */
/* Firefox displays this on top */
.on("click", function(d) {
if(!d.children){
window.open(d.url);
}
})
.attr("class","foreignobj")
.append("xhtml:div")
.attr("dy", ".75em")
.html(function(d) { return d.name;
})
.attr("class","textdiv"); //textdiv class allows us to style the text easily with CSS
/* create transition function for transitions */
function transition(d) {
if (transitioning || !d) return;
transitioning = true;
var g2 = display(d),
t1 = g1.transition().duration(750),
t2 = g2.transition().duration(750);
// Update the domain only after entering new elements.
x.domain([d.x, d.x + d.dx]);
y.domain([d.y, d.y + d.dy]);
// Enable anti-aliasing during the transition.
svg.style("shape-rendering", null);
// Draw child nodes on top of parent nodes.
svg.selectAll(".depth").sort(function(a, b) { return a.depth - b.depth; });
// Fade-in entering text.
g2.selectAll("text").style("fill-opacity", 0);
g2.selectAll("foreignObject div").style("display", "none"); /*added*/
// Transition to the new view.
t1.selectAll("text").call(text).style("fill-opacity", 0);
t2.selectAll("text").call(text).style("fill-opacity", 1);
t1.selectAll("rect").call(rect);
t2.selectAll("rect").call(rect);
t1.selectAll(".textdiv").style("display", "none"); /* added */
t1.selectAll(".foreignobj").call(foreign); /* added */
t2.selectAll(".textdiv").style("display", "block"); /* added */
t2.selectAll(".foreignobj").call(foreign); /* added */
// Remove the old node when the transition is finished.
t1.remove().each("end", function() {
svg.style("shape-rendering", "crispEdges");
transitioning = false;
});
}//endfunc transition
return g;
}//endfunc display
function text(text) {
text.attr("x", function(d) { return x(d.x) + 6; })
.attr("y", function(d) { return y(d.y) + 6; });
}
function rect(rect) {
rect.attr("x", function(d) { return x(d.x); })
.attr("y", function(d) { return y(d.y); })
.attr("width", function(d) { return x(d.x + d.dx) - x(d.x); })
.attr("height", function(d) { return y(d.y + d.dy) - y(d.y); })
.style("background", function(d) { return d.parent ? color(d.name) : null; });
}
function foreign(foreign){ /* added */
foreign.attr("x", function(d) { return x(d.x); })
.attr("y", function(d) { return y(d.y); })
.attr("width", function(d) { return x(d.x + d.dx) - x(d.x); })
.attr("height", function(d) { return y(d.y + d.dy) - y(d.y); });
}
function name(d) {
return d.parent
? name(d.parent) + "." + d.name
: d.name;
}
Raw
style.css
rect {
stroke: black;
stroke-width: 3px;
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment