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Last active August 29, 2015 14:01
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This is an example of merged JSON documents for variant annotations (actual data may not be accurate)
{
"_id": "15:g.33905410A>G",
"mutdb": {
"chromEnd": 33905410,
"dbsnp_id": "rs2229116",
"allele2": "G",
"uniprot_id": "VAR_011405",
"allele1": "A",
"mutpred_score": 0.384,
"cosmic_id": null,
"chromStart": 33905410,
"chrom": "15",
"strand": "p"
},
"dbsnp": {
"chromEnd": 33905410,
"snpclass": "single",
"allele2": "G",
"allele1": "A",
"rsid": "rs2229116",
"func": "missense",
"chromStart": 33905409,
"chrom": "15",
"strand": "+"
},
"cosmic": {
"chromEnd": 33905410,
"allele2": "G",
"allele1": "A",
"mut_freq": ".9",
"chromStart": 33905410,
"chrom": "15",
"mut_nt": "A>G",
"tumor_site": "large_intestine"
},
"gwassnps": {
"chromEnd": 33905410,
"allele2": "G",
"trait": "A genome-wide association study of carotid atherosclerosis in HIV-infected men.",
"allele1": "A",
"pubmedID": 20009918,
"rsid": "rs2229116",
"chromStart": 33905409,
"chrom": "15"
}
}
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