Created
September 17, 2014 16:49
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An example of "/metadata" output from MyGene.info
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{ | |
"app_revision": "193:7417080ffb37", | |
"available_fields": [ | |
"accession", | |
"alias", | |
"biocarta", | |
"chr", | |
"end", | |
"ensemblgene", | |
"ensemblprotein", | |
"ensembltranscript", | |
"entrezgene", | |
"exons", | |
"flybase", | |
"generif", | |
"go", | |
"hgnc", | |
"homologene", | |
"hprd", | |
"humancyc", | |
"interpro", | |
"ipi", | |
"kegg", | |
"mgi", | |
"mim", | |
"mirbase", | |
"mousecyc", | |
"name", | |
"netpath", | |
"pdb", | |
"pfam", | |
"pharmgkb", | |
"pid", | |
"pir", | |
"prosite", | |
"ratmap", | |
"reactome", | |
"reagent", | |
"refseq", | |
"reporter", | |
"retired", | |
"rgd", | |
"smpdb", | |
"start", | |
"strand", | |
"summary", | |
"symbol", | |
"tair", | |
"taxid", | |
"type_of_gene", | |
"unigene", | |
"uniprot", | |
"wikipathways", | |
"wormbase", | |
"xenbase", | |
"yeastcyc", | |
"zfin" | |
], | |
"genome_assembly": { | |
"fruitfly": "dm3", | |
"rat": "rn4", | |
"nematode": "ce10", | |
"human": "hg38", | |
"zebrafish": "zv9", | |
"mouse": "mm10", | |
"frog": "xenTro3", | |
"pig": "susScr2" | |
}, | |
"source": "genedoc_mygene_allspecies_20140907_fmdzcpbi", | |
"src_version": { | |
"ucsc": "20140901", | |
"netaffy": "na33", | |
"uniprot": "20140904", | |
"pharmgkb": "20140904", | |
"ensembl": 76, | |
"cpdb": 28, | |
"entrez": "20140906" | |
}, | |
"stats": { | |
"total_genes": 17109890, | |
"total_ensembl_only_genes": 853821, | |
"total_ensembl_genes": 1570101, | |
"total_entrez_genes": 16256069, | |
"total_ensembl_genes_mapped_to_entrez": 716280, | |
"total_species": 14238 | |
}, | |
"taxonomy": { | |
"fruitfly": 7227, | |
"rat": 10116, | |
"nematode": 6239, | |
"thale-cress": 3702, | |
"human": 9606, | |
"zebrafish": 7955, | |
"mouse": 10090, | |
"frog": 8364, | |
"pig": 9823 | |
}, | |
"timestamp": "2014-09-08T00:57:27.791000" | |
} |
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