Created
July 25, 2012 00:33
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Cythonize instance method of Python class
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import numpy as np | |
from scipy.special import gammaln | |
class MyClass(object): | |
def __init__(self, n, x): | |
self.n = n | |
self.x = np.abs(x) | |
def fun(self): | |
return (np.random.rand(self.n), gammaln(self.x)) | |
if __name__ == '__main__': | |
np.random.seed(8675309) | |
mc = MyClass(5, 12) | |
(r, gx) = mc.fun() | |
print r | |
print gx |
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import types | |
import numpy as np | |
import cy1fun | |
class MyClass(object): | |
def __init__(self, n, x): | |
self.n = n | |
self.x = np.abs(x) | |
# Add the cython implementation of fun to the class as an instance method | |
# Want to do this, but it doesn't work | |
# MyClass.fun = cy1fun.fun | |
# Need to do this instead | |
MyClass.fun = types.MethodType(cy1fun.fun, None, MyClass) | |
if __name__ == '__main__': | |
np.random.seed(8675309) | |
mc = MyClass(5, 12) | |
(r, gx) = mc.fun() | |
print r | |
print gx |
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# build with: python setup.py build_ext --inplace | |
# see setup.py below | |
import numpy as np | |
cimport numpy as np | |
from scipy.special import gammaln | |
def fun(object self): | |
return (np.random.rand(self.n), gammaln(self.x)) |
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import types | |
import numpy as np | |
import cy2fun | |
class MyClass(object): | |
def __init__(self, n, x): | |
self.n = n | |
self.x = np.abs(x) | |
# Add the cython implementation of fun to the class as an instance method | |
# Want to do this, but it doesn't work | |
# MyClass.fun = cy2fun.fun | |
# Need to do this instead | |
MyClass.fun = types.MethodType(cy2fun.fun, None, MyClass) | |
if __name__ == '__main__': | |
np.random.seed(8675309) | |
mc = MyClass(5, 12) | |
(r, gx) = mc.fun() | |
print r | |
print gx |
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# build with: python setup.py build_ext --inplace | |
# see setup.py below | |
import numpy as np | |
cimport numpy as np | |
cdef extern from "gsl/gsl_sf_gamma.h": | |
double gsl_sf_lngamma(double x) | |
cdef gammaln(double x): | |
return gsl_sf_lngamma(x) | |
def fun(object self): | |
return (np.random.rand(self.n), gammaln(self.x)) |
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import numpy as np | |
from distutils.core import setup | |
from distutils.extension import Extension | |
from Cython.Distutils import build_ext | |
cy1fun = Extension("cy1fun", ["cy1fun.pyx"], | |
include_dirs=[np.get_include()], | |
) | |
gsl_include_dir = "/usr/local/include" | |
gsl_lib_dir = "/usr/local/lib" | |
cy2fun = Extension("cy2fun", ["cy2fun.pyx"], | |
include_dirs=[np.get_include(), | |
gsl_include_dir], | |
library_dirs=[gsl_lib_dir], | |
libraries=["gsl"], | |
) | |
setup(cmdclass={'build_ext': build_ext}, | |
ext_modules=[cy1fun, cy2fun] | |
) |
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