Skip to content

Instantly share code, notes, and snippets.

@ngehlenborg
Last active April 14, 2023 14:21
Show Gist options
  • Save ngehlenborg/bcfdeaa58e9d7d97e0aae92cd1ce539b to your computer and use it in GitHub Desktop.
Save ngehlenborg/bcfdeaa58e9d7d97e0aae92cd1ce539b to your computer and use it in GitHub Desktop.
name figures
Title of the Vignette
name file
The messy title
clean_file.json
name file
Oh how beautiful
nice-figure.json

Here is what is going on

This figure shows bla blabla .... It's is in a Markdown file with formatting and stuff.

You can create new paragraphs by adding one blank line. More documentation for the Markdown can be found here: https://www.markdownguide.org

We have extensive documentation on how to create the Vitessce configurations: http://github.com/vitessce/vitessce-python-tutorial

Organize your upload directory as follows:

  metadata.tsv
- extras
  contributors.tsv  
  <any others files that you want to share>
  <but definitely all files references by the Vitessce configurations in your vignettes>
- vignettes
  - vignette_scRNAseq
    - description.md
    - clean_file.json
    - nice-figure.json
  - vignette_something-else
    - description.md
    - figure_1.json
  - some-other-vignette
    - description.md
    - vitessce-01.json
    - vitessce-02.json
    - vitessce-03.json
    - vitessce-04.json
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment