nhoffman

from setuptools import setup, find_packages
from pathlib import Path


with open("README.md", "r") as readme:
    long_description = readme.read()

scripts_dir = Path(__file__).parent / 'openaiwrappers' / 'scripts'
scripts = [fn.stem for fn in scripts_dir.iterdir()
           if not fn.stem.startswith('__')]

nhoffman

#!/usr/bin/env python3

"""Reformat sqlcmd output to csv

- writes output of the sql query to a temporary file
- saves query as unicode and converts utf-16 to utf-8
- replaces "NULL" with empty cells
"""

import os

nhoffman

#!/usr/bin/env python3

"""Scrape all urls from an html document

"""

import os
import sys
import argparse

nhoffman

#!/usr/bin/env python3

"""Describe author contributions for one or more git repositories by date

Output is a csv with columns (repo, author, timestamp, churn) where
'churn' is the sum of lines added and lines removed.

Requires pandas and plotnine

"""

nhoffman

// ==UserScript==
// @name         medialab_cap_topics
// @namespace    http://tampermonkey.net/
// @version      0.6
// @description  Add a menu to MediaLab inspection proof to filter CAP checklist items
// @author       Noah Hoffman
// @match        https://www.medialab.com/lms/admin/ad_ic_viewchecklist.aspx?*
// @require      http://code.jquery.com/jquery-3.4.1.min.js
// @icon         data:image/gif;base64,R0lGODlhAQABAAAAACH5BAEKAAEALAAAAAABAAEAAAICTAEAOw==
// @grant        none

nhoffman

#!/usr/bin/env python3

"""Show cloudwatch log events.

Examples:

Show log stream containing the most recent event for a log group:

  cwlog.py -g /aws/lambda/lambda-labreport

nhoffman

#!/usr/bin/env python3

"""Reformat of output/per_pquery_assign (output of 'gappa assign')

see https://github.com/lczech/gappa/wiki/Subcommand:-assign

Use "afract" for filtering, based on two criteria.

1. keep lineages with afract => min-afract
2. keep ranks with a cumulative value of afract >= min-total

nhoffman

#!/usr/bin/env python

"""Produce a table of classifications for each input sequence in the
output of guppy classify

"""

from __future__ import print_function
import sys
import argparse

nhoffman

---
title: [title]
author: Noah Hoffman
date: "`r format(Sys.time(), '%Y-%m-%d')`"
output:
  html_document:
    toc: true
---

# setup

nhoffman

from scipy.interpolate import interp1d
import numpy as np

import shlex
import subprocess as sp

import prettyplotlib as ppl
from matplotlib import pyplot as plt
from matplotlib.ticker import FuncFormatter
import io