nick-youngblut

jupyter
ipykernel
nb_conda_kernels
r-irkernel
r-renv
r-plyr
r-dplyr
r-tidyr
r-ggplot2
r-data.table

nick-youngblut

#!/usr/bin/env Rscript

# library
suppressPackageStartupMessages(library("argparse"))

# create parser object
parser <- ArgumentParser()

# specifying options
parser$add_argument("file", nargs=1, help="File to be displayed")

nick-youngblut

#!/usr/bin/env python
from __future__ import print_function
import os
import sys
import re
import gzip
import bz2
import argparse
import logging

nick-youngblut

#!/usr/bin/env python
from __future__ import print_function
import sys,os
import gzip
import argparse
from Bio import SeqIO

desc = 'Convert between quality fastq formats'
epi = """DESCRIPTION:
  Convert between fastq quality formats by using biopython.